Corresponding author: Farzan Modaresi ( modaresi7079@gmail.com ) Academic editor: Milen Dimitrov
© 2022 Keramat Dorri, Farzan Modaresi, Mohammad Reza Shakibaie, Elham Moazamian.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Dorri K, Modaresi F, Shakibaie MR, Moazamian E (2022) Effect of gold nanoparticles on the expression of efflux pump mexA and mexB genes of Pseudomonas aeruginosa strains by Quantitative real-time PCR. Pharmacia 69(1): 125-133. https://doi.org/10.3897/pharmacia.69.e77608
|
Antibiotic-resistant Pseudomonas aeruginosa infections are usually difficult to treat, and there are limited antibiotics for treating them. Increased antibiotic resistance of this bacterium, especially in a multidrug form, has caused many problems for treatment. Nowadays, metal nanoparticles are considered as appropriate alternatives to antibiotics. The objective of the present study was to investigate the effect of gold nanoparticles on the expression of MexB and MexA genes in Pseudomonas aeruginosa isolates.Pseudomonas aeruginosa isolate was identified using biochemical tests and an API kit. The antibiotic sensitivitytest for different antibiotics was performed withthe Kirby-Bauer test according to the CLSI standard. The presence of MexB and MexA genes was assessed by PCR. The effect of gold nanoparticles was investigated by microdilution to evaluate the minimum inhibitory concentration, and the expression of MexB and MexA treated genes was done with silver nanoparticles by the Real-Time PCR method.40 Pseudomonas aeruginosa isolates were detected and identified. These isolates showed significant resistance to various antibiotics. All strains were carriers of MexB and MexA genes, and finally, in the expression of MexB and MexA genes,a significant decrease in the expression of these genes was observed in the samples treated with gold nanoparticles compared to non-treated samples.One of the mechanisms of antibacterial activity of gold nanoparticles is through reducing the expression of mexA and mexB genes and thus reducing the number of active efflux pumps at the cell surface.
Pseudomonas aeruginosa, gold nanoparticles, MexA, MexB, Real Time PCR
Pseudomonas aeruginosa is a gram-negative opportunistic pathogen that is a major cause of death in immunocompromised patients due tothe creation of life-threatening infections (
The present study was conducted on Pseudomonas aeruginosa strains in patients suspected of having Pseudomonas aeruginosa infections and referred to hospitals and health centers in the south of Fars province, Iran, within 12 months from September 2018 to September 2019. The clinical samples were burn, throat, nose, and 6 from the referred patients.
Identification and detection of Pseudomonas were made biochemically using an API kit. In the biochemical method, gram staining and biochemical detection tests including oxidase, evaluation of fermentation on TSI, oxidation of glucose in the OF medium, evaluation of motility on SIM medium, indole, growth at 42 °C, and arginine dihydrolase tests, were performed to identify and detect Pseudomonas aeruginosa. In the method of using API kit, Pseudomonas aeruginosa samples were confirmed, and Pseudomonas aeruginosa ATCC27853 was considered as a positive control.
In order to evaluate the antibiotic sensitivity of Pseudomonas aeruginosa strains, the disc diffusion method was used by employing Mueller-Hinton agar culture medium as a growth medium for bacteria and antibiotic discs Ciprofloxacin,Imipenem,Amikacin,Aztreonam, Cefepime, Ceftazidime,Ertapenem,Fosfomycin, Gentamicin, Piperacillin,Colistin,Polymyxin B,Rifampin, Tetracycline,Ticarcillin, Tobramycin,Trimethoprim,Tigecycline and Meropenem according to CLSI standard.
After culturing the identified isolates of Pseudomonas aeruginosa on MacConkey agar culture medium, the genomes of all isolates were extracted using a DNA extraction kit (Bioneer Co. Korea). The polymerase chain reaction was performed with a final volume of 25 μL. This reaction involves 12.5 μLof mastermix (Amplicon, Denmark), 1.5 μL of forward primer, and 1.5 μLof reverse primer (offered by Bioneer Co. Korea), 2.5 μLof DNA template, and 7 μl of distilled water. The information related to primer sequence and conditions used for replication of gyrB, rhlR, exoT, lasR, PelA, and toxA genes are presented in Table
Frequency of gyrA, rhR, exoT, lasT, Pela and toxA resistance genes in different antibiotics.
MEM | TGC | TS | TN | TC | T | RP | PRL | GM | FOT | ETP | CAZ | CPM | ATM | AK | IMI | CIP | Gene |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | 32 | 32 | 4 | 10 | 32 | 32 | 4 | 5 | 18 | 21 | 4 | 28 | 8 | 2 | 2 | 3 | exo.T |
(0%) | (80%) | (80%) | (10%) | (25%) | (80%) | (80%) | (10%) | (12.5%) | (45%) | (52.5%) | (10%) | (70%) | (20%) | (5%) | (5%) | (7.5%) | |
1 | 40 | 40 | 5 | 10 | 40 | 40 | 5 | 6 | 21 | 25 | 4 | 34 | 9 | 3 | 3 | 3 | rhl.R |
(2.5%) | (100%) | (100%) | (12.5%) | (25%) | (100%) | (100%) | (12.5%) | (15%) | (52.5%) | (62.5%) | (10%) | (85%) | (22.5%) | (7.5%) | (7.5%) | (7.5%) | |
40 | 40 | 5 | 10 | 40 | 40 | 5 | 6 | 21 | 25 | 4 | 6 | 9 | 3 | 1 | 3 | lasR | |
(2.5%) | (100%) | (100%) | (12.5%) | (25%) | (100%) | (100%) | (12.5%) | (15%) | (52.5% | (62.5%) | (10%) | (15%) | (22.5%) | (7.5%) | (2.5%) | (7.5%) | |
1 | 40 | 40 | 5 | 10 | 40 | 40 | 5 | 6 | 21 | 25 | 4 | 6 | 9 | 3 | 3 | 3 | Tox.A |
(2.5%) | (100%) | (100%) | (12.5%) | (25%) | (100%) | (100%) | (12.5%) | (15%) | (52.5% | (62.5%) | (10%) | (15%) | (22.5%) | (7.5%) | (7.5%) | (7.5%) | |
0 | 37 | 37 | 4 | 10 | 37 | 37 | 4 | 5 | 20 | 23 | 4 | 5 | 8 | 2 | 2 | 3 | pel.A |
(0%) | (92.5%) | (92.5%) | (10%) | (25%) | (92.5%) | (92.5%) | (10%) | (12.5%) | (50%) | (57.5%) | (10%) | (12.5%) | (20%) | (5%) | (5%) | (7.5%) | |
1 | 40 | 40 | 5 | 10 | 40 | 40 | 5 | 6 | 18 | 25 | 4 | 6 | 9 | 3 | 3 | 3 | gyrB |
(100%) | (100%) | (12.5%) | (25%) | (100%) | (100%) | (12.5%) | (15%) | (45%) | (62.5%) | (10%) | (15%) | (22.5%) | (7.5%) | (7.5%) | (7.5%) |
After culturing the identified isolates of Pseudomonas aeruginosa on MacConkey agar culture medium, the DNAs of all isolates were extracted using a DNA extraction kit (Bioneer Co. Korea). The polymerase chain reaction was performed with a final volume of 25 μL. This reaction included 12.5 μLof Master mix (Amplicon, Denmark), 1.5 μL of forward primer, 1.5 μL of reverse primer (offered by Bioneer Co. Korea), 2.5 μLof template DNA, and 7 μl of distilled water. The information related to primer sequence and conditions used to replicate the mexA and mexB genes are indicated in Table
In this method, 20 out of 40 Pseudomonas aeruginosa isolates were exposed to gold nanoparticles. The broth microdilution method was used for preparing Mc Farland Standard and minimum inhibitory concentration (MIC) of growth for gold nanoparticles, and a bacterial suspension with a suitable density of Mc Farland Standard barium sulfate was employed to study the effect of antimicrobial agents. In order to prepare this standard, 5% ml of 1% barium chloride was mixed with 9.95 ml of 1% sulfuric acid. Moreover, for preparing the suspension, the bacterium was taken from a newly cultured colony and dissolved in some sterile physiological saline, and the correct density of standard turbidity(determination of microbial concentration) was identified using absorption measurements in a spectrophotometer at a wavelength of 625 nm between 0.8% to 1%. The minimum inhibitory concentration of growth was identified using the standard method of Clinical and Laboratory Standards Institute (CLSI), and the broth dilution method was applied to determine the effect of gold nanoparticles in the case of exposure of bacteria to an antimicrobial suspension. MIC was considered as the lowest concentration of gold nanoparticles, which inhibits the growth of Pseudomonas aeruginosa isolates in culture medium was considered, and the broth microdilution method was used to assess the effect of different concentrations of gold nanoparticles on the expression of mexA and mexB genes of efflux pump on 20 isolates of Pseudomonas aeruginosa.
Extraction of RNA isolates treated with gold nanoparticles and non-treated in the logarithmic growth phase was performed using RNA extraction kit (Qiagen, USA) according to the instructions, and finally the DNase enzyme was employed to remove the remaining DNA, and then the concentration of RNA was determined by a nanodrop. The amount of 1 μg of RNA from the sample was used for synthesizing cDNA using a QuantiTect Reverse Transcription kit (Qiagen, USA). The quantitative reverse transcription PCR (qRT-PCR) using SYBR green-contained mastermix (Applied Biosystem, UK) was applied to evaluate the mexA and mexB genes of efflux pump.The materials used in 20 μL of mastermix were 2 μL of cDNA, 10 pM of forward and reverse primers, and 10 μL of SYBR green-contained mastermix performed on the Korean Bioneer device. The temperatures used in the qPCR were 90 °C for 10 minutes, 95 °C for 15 seconds, and 60 °C for 1 minute performed at 40 cycles. Moreover, the G74 gene was regarded as an internal control. Finally, the relative expression of mexA and mexB genes was calculated by the ΔΔCт method.
Statistical calculation of the present research was performed using SPSS software, and the Real-Time PCR data were analyzed by the one-way ANOVA analysis. P > 0.05 was considered statistically meaningful.
Most strains of Pseudomonas aeruginosa were isolated from wound samples, and the least strains were isolated from nasal samples (Fig.
In the studied samples, the lowest levels of resistance were related to colestine (0%), polymyxin B (0%), meropenem (2.5%), imipenem (7.5%), amikacin (7.5%), and ciprofloxacin (7.5%), respectively. The highest resistance was observed against trimethoprim (100%), tigecycline (100%), tetracycline (100%), and rifampin (100%) (Fig.
The results indicated that the studied strains of Pseudomonas aeruginosa were carriers of most of these genes. The prevalence of exoT, rhlR, lasR, gyrB, pelA, and toxA genes in isolates were 32 (80%), 40 (100%), 40 (100%), 40 (100%), 37 (92.5%), and 40 (100%), respectively (Figs
Since the antibiotic resistance in Pseudomonas aeruginosa has increased today than in the past, the presence of the above genes was investigated, which are effective factors in antibiotic resistance. According to the results, the prevalence of these genes was high in clinical isolates of Pseudomonas aeruginosa, indicating their role in antibiotic resistance in the evaluated isolates (Table
The presence of MexA and MexB genes in 40 Pseudomonas aeruginosa isolates was evaluated before investigating the gene expression; the results demonstrated that the pump efflux genes (MexA and MexB) were present in all studied isolates (Figs
In order to compare the effect of gold nanoparticles on the expression of MexA and MexB genes after RNA extraction and cDNA synthesis, the changes of gene expression in isolates of two cell groups of “gold nanoparticles- treated” and “non-treated” was quantitatively investigated using melting curve analysis and amplification plot (Figs
The expression rates of MexA and MexB genes in gold nanoparticle-treated isolates were meaning fully reduced compared to non-treated isolates, shown in Figs
According to the results, the inhibitory effect of gold nanoparticles on MexA gene is greater compared to MexB gene.
Since no new antibiotics are available presently to replace the existing antibiotics for Gram-negative pathogens, and there is no extensively available vaccine against these infections, just one way to mitigate the effects of infections is to control their spread that can only be achieved in the case of fully understanding of causes, dynamics, and complexity of the prevalence of these organisms. The objective of the present studies was to contribute to this knowledge by studying Pseudomonas aeruginosa, which is the cause of nosocomial infections in burn-injured patients.
Much research has been carried out on the resistance of pseudomonas, the results of which are different in terms of time and place. In the present study, antibiotic resistance of 40 isolated strains from Omidvar hospital of Evaz city, Valiasr hospital of Lamerd city, Imam Reza hospital of Lar city, and Ostad Motahhari and Peymaniyeh hospitals of Jahrom city were evaluated; the resistance rates was as follows:Colestine 0%, ciprofloxacin 3 (7.5%), imipenem 3 (7.5%), amikacin 3 (7.5%), aztreonam 9 (22.5%), cefepime 6 (15%), ceftazidime 40 (100%), ertapenem 25 (62.5%), fosfomycin21 (52.5%), gentamicin 6 (15%), piperacillin 5 (12.5%), polymyxin B 0%, Rifampin 40 (100%), tetracycline 40 (100%), ticarcillin 10 (25%), tobramycin 5 (12.5%), trimethoprim 40 (100%), tigecycline 40 (100%), and meropenem 1 (5/2%).
In a study conducted by Shahid et al on Pseudomonas aeruginosa strains at the burn care units, the lowest and highest resistances were against the tetracycline (0%) and gentamicin (90%), respectively(Shahid et al. 2003). According to the present study, the results indicated an increase in drug resistance for the reason of overuse over a period of time. According to the results of the present research as well as the literature, the colestine and polymyxin B are the best therapeutic options against Pseudomonas aeruginosa infections.
Pseudomonas aeruginosa is a stubborn microorganism in terms of resistance to various antibiotics and possesses three main mechanisms of limited adsorption resistance and efflux, drug inactivation, and change in targets (
Among these systems, the MexAB-oprM is of great importance nowadays, which is responsible for the excretion of beta-lactams, quinolones, and an extensive range of anti-microorganisms. In the present article, the presence of mexA and mexB genes was investigated. The MexAB-oprM genes are chromosomal genes present in all wild strains, and their absence can be attributed to mutations. Arabestani et al. concluded that mexAB-oprM genes were present in 100% isolates of Pseudomonas aeruginosa (
Many investigation sindicate that the antimicrobial properties of antibiotics can be increased by destroying efflux pumps. The inhibitors of these pumps can be employed to disrupt the function of drug efflux pumps. Nowadays, various inhibitors, such as alanine-arginine beta-naphthylamide,can change the minimum concentration of inhibitors by excreting toxic substances. Gold nanoparticles currently have extensive applications in biomedicine, including bioimaging, gene transfer, drug delivery, plasmonic biosensing, colorimetric assays, tissue engineering, imaging therapy, and cancer therapy. The antibacterial mechanism for gold nanoparticles depends on their size; smaller gold nanoparticles create irreversible pores as they move through the bacterial cell membrane (
Aria et alstudied the effect of vanilla and the applicaiton of gold nanoparticles on multidrug-resistant isolates of Pseudomonas aeruginosa and concluded that treatment with gold nanoparticles reduced the expression of mexA and mexB genes, which is in line with the results of the present paper(
Furthermore, Mohammadipour et al. conducted a piece of researcher garding the effect of encapsulated silybin in nanoparticles on the expression of oprM gene in resistant strains of Pseudomonas aeruginosa and concluded thata decrease in oprM expression in resistant isolates caused a reduction in mexAB-oprM, mexXY-oprM on the cell surface and an increase in the sensitivity to antibiotics that were in line with the results of the present research (
Rudbaraki conducted an study on the change of mexB gene expression in ciprofloxacin-resistant Pseudomonas aeruginosa isolates under treatment with encapsulated silibinin in nanoparticles and concluded that silibinin increases the capability of ciprofloxacin in inhibiting the growth of Pseudomonas aeruginosa by reducing the expression of genes involved in efflux pump systems, such as mexB gene (Ahmadi et al. 2017).
In the present study, the expression rate of MexA gene in gold nanoparticle-treated isolates was significantly reduced thanin non-treated isolates. An investigation on MexB expression indicated that gold nanoparticle-treated samples showed a significant decrease in expression compared to non-treated samples. According to the findings, the inhibitory effect of gold nanoparticles on MexA gene is higher than this effect on MexB gene.
The MexAB-oprM system is one of the main factors in the resistance of Pseudomonas aeruginosa. The results of the present investigation indicated that gold nanoparticles reduce the number of active efflux pumps on the cell surface by reducing the expression of mexA and mexB genes so that a decrease in the level of these efflux pumps reduces the excretion of antibiotics from the cell and subsequently causes lower concentrations of antibiotics to be able to kill cells.