Research Article |
Corresponding author: Ahmad H. Abdullah ( aabdullah@zu.edu.jo ) Academic editor: Plamen Peikov
© 2024 Ahmad H. Abdullah, Ahmad K. Alarareh, Mahmoud A. Al-Sha’er, Almeqdad Y. Habashneh, Firas F. Awwadi, Sanaa K. Bardaweel.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Abdullah AH, Alarareh AK, Al-Sha’er MA, Habashneh AY, Awwadi FF, Bardaweel SK (2024) Docking, synthesis, and anticancer assessment of novel quinoline-amidrazone hybrids. Pharmacia 71: 1-12. https://doi.org/10.3897/pharmacia.71.e117192
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A group of new amidrazone compounds that include a quinoline component was produced through the reaction of hydrazonyl chloride, derived from 6-aminoquinoline, with appropriate secondary cyclic amines. The new compounds were confirmed through 1H-NMR, 13C-NMR, FTIR, and HRMS, and further verified by single-crystal X-ray diffraction. The antitumor potential of the synthesized compounds was tested against lung cancer (A549) and breast cancer (MCF-7) cell lines. Among the compounds, the ethyl carboxylate and o-hydroxy phenyl piperazine derivatives (10d and 10g) exhibited the strongest activity against both cell lines, with IC50 values of 43.1 and 59.1 μM for the lung and breast cancer cell lines, respectively. Moreover, the most potent compounds were subsequently docked into the c-Abl kinase binding site (PDB code: 1IEP) as a possible anticancer mechanism. In-silico ADMET study shows acceptable pharmacokinetic properties, and the toxicity profile for the most potent compounds is non-carcinogenic.
Amidrazones, anti-tumor, c-Abl kinase, Japp-Klingmann reaction, (ADME)
Quinoline derivatives have exhibited great potential as effective anticancer agents by selectively targeting and inhibiting the growth and proliferation of cancer cells (
The open capillary method on a Melting Point Meter M3000 (KRÜSS Optronic, Germany) was used to determine the melting points, which are uncorrected. The PerkinElmer Spectrum Two FT-IR Spectrometer (Diamond ATR FTIR) (Perkin-Elmer, USA) was employed to record the IR spectra, with a spectral resolution of 4 cm-1 and a range of 4000 – 400 cm-1. Bruker Avance Spectrometer AV500 (Bruker, Germany) was used to record 1H, 13C NMR, and 2D NMR spectra, with DMSO d6 as the solvent and TMS as an internal standard; chemical shifts were expressed in δ units, and the J value was given in Hertz. HRMS measurements were conducted using the electrospray ion trap (ESI) technique by collision-induced dissociation on a Bruker APEX-4 (7 Tesla) instrument in positive or negative ion mode. The samples were dissolved in chloroform and infused using a syringe pump with a flow rate of 2 µL/min, and external calibration was carried out using an arginine cluster in a mass range of m/z 175–871, with a mass error of 0.00–0.50 ppm. CrysAlisPro was utilized to determine and refine cell properties with multiscan absorption collection and transmission factors of 1.00000 and 0.00000 as maximum and minimum. The structure was solved using Direct Methods and refined using full-matrix least-squares on F2, with non-hydrogen atoms anisotropically refined, and hydrogen atoms placed in estimated locations and refined using a riding model. All reactions were monitored by thin layer chromatography, performed on silica gel 60 WF254S aluminum sheets (Merck, Germany), and visualized using UV light. Chemical reagents in high purity were purchased from Acros Organics (in Belgium). Software: Licensed Biovia 4.5 installed on the USER-THINK server with the following properties; CPU 3.1 GH, RAM 8.00 GB, System type 64 bit, Windows 7.
The given compound was synthesized using the following steps: In step (i), a solution of Compound 6-aminoquinoline 6 (2.6 g, 0.01 mol) in 6N aqueous hydrochloric acid (16 mL) was prepared. Sodium nitrite (0.76 g, 0.011 mol) dissolved in water (1.5 mL) was added drop-wise to this solution with efficient stirring at 0–5 °C. The mixture was stirred for 20–30 min. In step (ii), the resulting quinolin-6-diazonium chloride 6A solution, obtained from step (i), was added to a cold solution (0 to -10 °C, ice-salt bath) of 3-chloropentan-2,4-dione (1.35 g, 0.01 mol) in ethanol/water (16 mL, 1:1 v/v) containing 30.0 g of sodium acetate, with vigorous stirring. The mixture was stirred until a solid precipitate formed (5–10 min). The reaction mixture was then diluted with cold water (250 mL). The solid product was collected by suction filtration, washed several times with cold water, and dried. The resulting product was solid with a brownish color. Yield: 94%, brownish powder, mp 197 °C dec; Rf = 0.71: dichloromethane/methanol = 9.75:0.25 by volume). IR (KBr) n 1026, 1171, 1215, 1542, 1689, 2938, 3105 cm-1; 1H NMR (500 MHz, DMSO-d6) d 2.58 (s, 3H, -COCH3), 7.49 (dd, J = 8.1, 8.2 Hz, 1H, H-3), 7.86 (s, 1, H – 5), 7.97 (d, J = 9.0 Hz, 1H, H-7), 8.00 (d, J = 9.0 Hz, 1-H, H-8), 8.30 (d, J = 8.2 Hz, 1H, H-4), 8.76 (d, J = 8. ,1H, H-2), 10.98 (s, 1H, -NH), 13C NMR (125 MHz, DMSO-d6) d 25.9 (-COCH3), 110.2 (C-5), 120.0 (C-7), 122.4 (C-3), 124.4 (C=N), 129.1 (C-4a), 130.7 (C-8), 135.7 (C-4), 141.0 (C-6), 145.1 (C-8a), 149.0 (C-2), 188.5 (-COCH3), HRMS (ESI) calcd for C12H11ClN3O [M+H]+ m/z: 248.05852, found 248.05789.
Compound 8 (0.65 g, 1.8 mmol) was suspended in ethanol (15 mL) at a temperature of 0 to -10 °C. A solution containing the appropriate secondary amine (2.2 mmol) and triethylamine (2 mL) in ethanol (5 mL) was added to the suspension with stirring. The stirring was continued at 0–5 °C for 2–4 h and then at room temperature overnight. The solvent was then removed under reduced pressure, and the resulting residue was treated with water (15 mL). The crude solid product was collected by suction filtration, washed with water, dried, and recrystallized using CHCl3.
Yield : 40.1%, brownish powder, mp 212 °C dec; Rf = 0.69 dichloromethane/methanol = 9.75:0.25 by volume). IR (KBr) n 1029, 1125, 1215, 1232, 1375, 1515, 1624, 1667, 2853 cm-1; 1H NMR (500 MHz, DMSO-d6) d 2.41 (br.s, 1-H, H-4’), 2.46 (br.s, 3H, Z/E, -COCH3), 2.98 (br.s, 4H, (H-3’,H-5’)), 3.21 (br.s, 4H, (H-2’,H6’)), 7.44 (br.s, 1H, H-3), 7.78 (s, 1H, H-5), 7.96 (br.s, 2H, (H-7, H-8)), 8.24 (br.s, 1H, H-4), 8.70 (br.s, 1H, H-2), 9.98, 10.07 (Z/E, 1H, -NH), 13C NMR (125 MHz, DMSO-d6) d 26.7 (-COCH3), 47.7 (C-3’,C-5’), 48.1 (C-2’,C-6’), 109.0 (C-5), 120.3 (C-7), 122.3, 122.1 (Z/E, C-3), 129.4 (C-4a), 130.4, 130.5 (Z/E, C-8), 135.2 (C-4), 141.7, 141.9 (Z/E, C-6), 144.1 (C-8a), 144.7 (-C=N), 148.3 (C-2), 195.1, 195.3 (-COCH3), HRMS (ESI) calcd for C16H19N5NaO [M+Na]+ m/z : 320.14818, found 320.14509.
Yield: 91.3%, yellowish powder, mp 104 °C dec; Rf = 0.78 (dichloromethane/methanol = 9.75:0.25 by volume). IR (KBr) n 957, 974, 1033, 1066, 1111, 1206, 1234, 1279, 1334,1360, 1496, 1510, 1538, 1598, 1623, 1643, 2860, 3209, 3438 cm-1; 1H NMR (500 MHz, DMSO- d6) d 2.40 (s, 3H, -COCH3), 2.97 (br.s, 4H, (H-2’, H-6’)), 3.77 (br.s, 4H, (H-3’, H-5’)), 7.44 (dd, J = 8.3 , 8.3 Hz, 1H, H-3), 7.76 (s, 1H, H-5), 7.93 (d, J = 9.2 Hz, 1H, H-7), 7.95 (pst, 1H, H-8), 8.22 (d, J = 8.2 Hz, 1H, H-4), 8.69 (d, J = 4.00 Hz, 1H, H-2), 10.14 (s, 1H, -NH); 13C NMR (125 MHz, DMSO-d6) d 26.7 (-COCH3), 47.7 (C-3’,C-5’), 48.1 (C-2’,C-6’), 109.0 (C-5), 120.3 (C-7), 122.3, 122.1 (Z/E, C-3), 129.4 (C-4a), 130.4, 130.5 (Z/E, C-8), 135.2 (C-4), 141.7, 141.9 (Z/E, C-6), 144.1 (C-8a), 144.7 (-C=N), 148.3 (C-2), 195.1, 195.3 (-COCH3), HRMS (ESI) calcd for C16H19N4O2 [M+H]+ m/z : 299.15025, found 299.14985.
Yield: 85.0%, Reddish powder, mp 160 – 162 °C; Rf = 0.78 (dichloromethane/methanol = 9.75:0.25 by volume). IR (KBr) n 947, 969, 1117, 1166, 1211, 1279, 1347, 1376, 1515, 1622, 1657, 2851, 2902, 3248 cm-1; 1H NMR (500 MHz, DMSO d6) d 2.39 (s, 3H, -COCH3), 2.81 (br.s, 4H, (H-3’,H-5’)), 3.16 (br.s, 4H, (H-2’,H6’)), 7.43 (dd, J = 8.3, 8.3 Hz, 1H, H-3), 7.76 (s, 1H, H-5), 7.94 (d, J = 1.8 Hz, 1H, H-7), 7.95 (d, J = 9.1 Hz, 1H, H-8), 8.20 (d, J = 8.2 Hz, 1H, H-4), 8.68 (d, J = 4.0 Hz, 1H, H-2), 10.06 (s, 1H, – NH); 13C NMR (125 MHz, DMSO d6) d 26.4 (-COCH3), 27.5 (C-3’,C-5’), 50.6 (C-2’,C-6’), 109.2 (C-5), 120.5 (C-7), 122.5 (C-3), 129.3 (C-4a), 130.6 (C-8), 135.3 (C-4), 141.7 (C-6), 144.6 (C-8a), 144.7 (-C=N), 148.5 (C-2), 195.1 (-COCH3); HRMS (ESI) calcd for C16H19N4OS [M + H]+ m/z : 315.12741, found: 315.12670.
Yield: 85.7% , brownish powder, mp 125 °C dec; Rf = 0.88 (dichloromethane/methanol = 9.75:0.25 by volume). IR (KBr) n 967, 992, 1027, 1093, 1118, 1159, 1178, 1208, 1248, 1280, 1338, 1357, 1372, 1423, 1510, 1622, 1663, 1684 , 2854, 2923, 3247 cm-1; 1H NMR (500 MHz, DMSO d6) d 1.19 (t, J = 7.1 Hz, 3H, -CH2CH3), 2.39 (s, 3H, -COCH3), 2.92 (br.s, 2H , (H-2’, H-6’)), 3.56 (br.s , 2H, (H-3’, H-5’)), 4.07 (q, J = 7.1 Hz, 2H, -CH2CH3), 7.44 (dd, J = 8.3, 8.3 Hz, 1H, H-3), 7.75 (s, 1H, H-5), 7.92 (d, J = 9.2 Hz, 1H, H-7), 7.95 (d, J = 9.1 , 1H, H-8), 8.21 (d, J = 3 Hz, 1H, H-4), 8.69 (ps-t, 1H, H-2), 10.17 (s, 1H, -NH); 13C NMR (125 MHz, DMSO d6) d 15.0 (-CH2CH3), 26.3 (-COCH3), 44.0 (C-3’, C-5’), 47.8 (C-2’, C-6’), 61.3 (-CH2CH3), 109.1 (C-5), 120.3 (C-7), 122.4 (C-3), 129.3 (C-4a), 130.4 (C-8), 135.3 (C-4), 141.7 (C-6), 143.6 (-C=N), 144.7 (C-8a), 148.4 (C-2), 155.3 (-CO2Et), 195.1 (-COCH3), HRMS (ESI) calcd for C19H24N5O3 [M + H]+ m/z : 370.18737, found 370.18886.
Yield = 89.2%, Yellowish powder, mp 157–159 °C; Rf = 0.50 (dichloromethane/methanol = 9.75:0.25 by volume). IR (KBr) n 977, 996, 1034, 1188, 1231, 1264, 1332, 1372, 1452, 1509, 1545, 1579, 1625, 1670, 2856, 2936, 3271 cm-1; 1H NMR (500 MHz, DMSO-d6) d 3.23 (s, 3H, -COCH3), 3.85 (br.s, 4H, (H-2’, H-6’)), 4.03 (br.s , 4H, (H-3’, H-5’)), 6.96 (d , J = 7.9 Hz, 1H, H-6’’), 7.10 (s, 1H, H-2’’), 7.16 (d, J = 8.2 Hz, 1H, H-4’’), 7.76 (ps-t, 1H, H-5’’), 8.17 (dd, J = 8.3 , 8.3 Hz , 1H, H-3), 8.51 (s, 1H, H-5), 8.68 (br.s, 1H, H-7), 8.68 (br.s, 1H,H-8), 8.95 (d, J = 8.2 Hz, 1H, H-4), 9.43 (d, J = 2.75 Hz, 1H, H-2), 9.90 (br.s, 1H, OH), 10.84 (s , 1H, -NH), 13C NMR (125 MHz, DMSO-d6) d 26.4 (-COCH3), 47.8 (C-2’,C-4’), 48.8 (C-3’, C-5’), 103.1 (C-2’’), 106.6 (C-6’’), 107.2 (C-4’’), 109.0 (C-5), 120.3 (C-7), 122.3 (C3), 129.4 (C-4a), 130.0 (C-5’’), 130.4 (C-8), 135.2 (C-4), 141.8 (C-6), 143.9 (C-8a), 144.8 (-C=N), 148.3 (C-2), 153.1 (C-1’’), 195.1 (-COCH3), HRMS (ESI) calcd for C19H24N5O3 [M + H]+ m/z: 390.19245, found: 390.19316.
Yield: 95.3%, yellowish powder, mp 177 °C dec; Rf = 0.88 (dichloromethane/methanol = 9.75:0.25 by volume). IR (KBr) n 965, 998, 1027, 1096, 1114, 1127, 1158, 1180, 1209, 1248, 1289, 1324, 1360, 1466, 1488, 1511, 1543, 1598, 1624, 1667, 2852, 3272 cm-1; 1H NMR (500 MHz, DMSO-d6) d 2.40 (s, 3H, -COCH3), 3.11 (br.s, 4H, (H-2’, H-6’), 3.71 (br.s, 4H, (H-3’, H-5’)), 7.08 (d, J = 9.3 Hz, 2H, (H-2’’, H-6’’)), 7.45 (dd, J = 8.3, 8.3 Hz, 1H, H-3), 7.78 (s , 1H, H-5), 7.95 (d, J = 9.2 Hz, 1H, H-7), 7.99 (d, J = 9.1 Hz, 1H, H-8), 8.09 (d, J = 9.1, 2H, (H-3’’, H-5’’)), 8.23 (d, J = 8.3 Hz, 1H, H-4), 8.70 (d, J = 3.8 Hz, 1H, H-2), 10.23 (s, 1H, – NH), 13C NMR (125 MHz, DMSO-d6) d (ppm): 26.3 (-COCH3), 47.1 (C-2’, C6’), 47.5 (C-3’, C-5’), 109.1 (C-5), 113.1 (C-2’’, C-6’’), 120.3 (C-7), 122.4 (C-3), 126.3 (C-3’’, C-5’’), 129.3 (C-4a), 130.5 (C-8), 135.2 (C-4), 137.2 (C-4’’), 141.8 (C-6), 143.4 (C=N), 144.8 (C-8a), 148.4 (C-2), 155.3 (C-1’’), 195.1 (-COCH3), HRMS (ESI) calcd for C19H24N5O3 [M + H]+ m/z : 419.18262 , found 419.18230.
Yield: 89.4%, Yellowish powder, mp 160 °C dec; Rf = 0.81 (dichloromethane/methanol = 9.75:0.25 by volume). IR (KBr). IR (KBr) n 1033, 1132, 1216, 1233, 1373, 1354, 1493, 1513, 1625, 1696, 2903, 2972, 3262 cm-1; 1H NMR (500 MHz, DMSO-d6) d 2.43 (s, 3H, -COCH3), 3.14 (br.s, 8H, (H-2’, H-3’, H-5’, H6’)), 6.81 (m, 2H, (H-4’’, H-5’’)), 6.82 (d, J = 7.2 Hz, 1H, H-6’’), 6.94 (d, J = 7.2 Hz, 1H, H-3’’), 7.44 (m, 1-H, H-3), 7.77 (s, 1H, H-5), 7.95 (br.s, 2H, (H-7, H-8)), 8.23 (d, J = 8.2 Hz, 1H, H-4), 8.70 (br.s, 1H, H-2), 9.02 (s, 1H, -OH), 10.10 (s, 1H, -NH), 13C NMR (125 MHz, DMSO-d6) d 26.4 (-COCH3), 48.1 (C-2’, C-6’), 50.6 (C-3’, C-5’), 109.0 (C-5), 116.1 , 119.1 (C-5’’, C-6’’), 119.8 (C-3’’), 120.3 (C-7), 122.4 (C-3), 123.4 (C-4’’), 129.3 (C-4a), 130.4 (C-8), 135.2 (C-4), 140.7 (C-2’’), 141.8 (C-6), 144.2 (C-8a), 144.5 (-C=N), 148.3 (C-2), 150.6 (C-1’’), 195.2 (-COCH3), HRMS (ESI) calcd for C22H24N5O2 [M + H]+ m/z : 390.19245, found 390.19326.
Yield: 91.1%, Brownish powder, mp 151–153 °C; Rf = 0.88 (dichloromethane/methanol = 9.75:0.25 by volume). IR (KBr) n 964, 1005, 1228, 1117, 1156, 1215, 1234, 1317, 1358, 1457, 1496, 1510, 1669, 2850, 2922, 3271 cm-1; 1H NMR (500 MHz, DMSO-d6) d 2.42 (s, 3H, -COCH3) , 3.11 (br.s, 4H, (H-2’ , H-6’)), 3.33 (br.s , 4H , (H-3’ , H-5’)), 7.00 (d, J = 8.4 Hz, 2H, (H-2’’, H-6’’)), 7.26 (d, J = 8.6 Hz, 2H, (H-3’’, H-5’’)), 7.45 (dd, J = 8.2, 8.3 Hz, 1H, H-3), 7.77 (s, 1H, H-3), 7.94 (d, J = 9.3 Hz, 1H, H-7), 7.95 (d, J = 9.0 Hz, 1H, H-8), 8.21 (d, J = 8.1, 1H, H-4), 8.70 (br.s, 1H, H-2), 10.12 (s, 1H, -NH), 13C-NMR (125 MHz, DMSO-d6) d (ppm): 26.4 (-COCH3), 47.7 (C-2’, C-6’), 48.6 (C-3’, C-5’), 109.0 (C-5), 117.4 (C-2’’,C-6’’), 120.3 (C-7), 122.3 (C-4’’), 122.7 (C-3), 129.1 (C-3’’, C-5’’, C4a), 130.4 (C-8), 135.2 (C-4), 141.8 (C-6), 143.8 (C-8a), 144.8 (-C=N), 148.4 (C-2), 150.5 (C-1’’), 195.2 (-COCH3), HRMS (ESI) calcd for C22H2335ClN5O [M+H]+ m/z : 408.15856, found 408.15764.
Yield = 88.0%, Brownish powder, m.p. 135–137 °C; Rf = 0.88 (dichloromethane/methanol = 9.75:0.25 by volume). IR (KBr) n 991, 1027, 1131, 1159, 1231, 1259, 1328, 1378, 1449, 1491, 1504, 1534, 1596, 1624, 1666, 2826, 2921, 3268 cm-1; 1H NMR (500 MHz, DMSO d6) d 2.49 (s, 3H, -COCH3), 3.13 (br.s, 4H, (H-2’, H-6’)), 3.35 (br.s, 4H, (H-3’, H-5’)), 6.79 (br.s, 1H, H-4’’), 6.96 (d, J = 6.8 Hz, 2H, (H-2’’, H-6’’)), 7.23 (br.s, 2H, (H-3’’, H-5’’), 7.44 (br.s, 1H, H-3), 7.79 (s, 1H, H-5), 7.96 (s, 1H, H-7), 7.97 (s, 1H, H-8), 8.22 (d, J = 7.35 Hz, 1H, H-4), 8.70 (br.s, 1H, H-2), 10.12 (s, 1H, -NH), 13C NMR (125 MHz, DMSO d6) d 26.4 (-COCH3), 47.8 (C-2’, C-6’), 48.8 (C-3’, C-5’), 109.0 (C-5), 116.0 (C-2’’, C-6’’), 119.2 (C-4’’), 120.3 (C-7), 122.3 (C-3), 129.4 (C-4a, C-3’’, C-5’’), 130.5 (C-8), 135.2 (C-4), 141.8 (C-6), 143.9 (C-8a), 144.8 (-C=N), 148.3 (C-2), 151.8 (C-1’’), 195.1 (-COCH3), HRMS (ESI) calcd for C22H24N5O [M + H]+ m/z : 374.19754, found 374.19660.
Yield: 92.6%, brownish powder, mp 161–163 °C; Rf = 0.46 (dichloromethane/methanol = 9.75:0.25 by volume). IR (KBr) n (cm-1): 955, 1034, 1134, 1230, 1375, 1451, 1512, 1620, 1675, 2947, 3257 cm-1; 1H NMR (500 MHz, DMSO d6) d 2.49 (s, 3H, -COCH3), 3.07 (br.s, 4H, (H-3’, H-5’)), 3.12 (br.s, 4H, (H-2’, H-6’)), 6.67 (d, J = 8.7 Hz, 2H, (H-2’’, H-6’’)), 6.82 (d, J = 8.2 Hz, 1H, (H-3’’, H-5’’)), 7.44 (dd, J = 8.3, 8.2 Hz , 1H, H-3), 7.77 (s, 1H, H-5), 7.95 (ps.t, 2H, (H-7, H-8)), 8.21 (d, J = 8.2 Hz, 1H, H-4), 8.69 (d, J = 2.75 Hz, 1H, H-2), 8.82 (s,1H,OH), 10.05 (s, 1H, NH): 13C NMR (125 MHz, DMSO d6) d 26.5 (-COCH3), 48.0 (C-2’), 50,6 (C-3’), 109.0 (C-5), 115.9 (C-2’’, C-6’’), 118.5 (C-3’’, C-5’’), 120.3 (C-7), 122.3 (C-3), 129.4 (C-4a), 130.4 (C-8), 135.2 (C-4), 141.8 (-C=N), 144.0 (C-8a), 144.7 (C-4’’), 145.0 (C-6), 148.3 (C-2), 151.4 (C-1’’), 195.1 (-COCH3); HRMS (ESI) calcd for C22H24N5O2 [M + H]+ m/z : 390.19245, found 390.19429.
Yield: 89.1%, yellowish powder, mp 135–137 °C; Rf = 0.73 (dichloromethane/methanol = 9.75:0.25 by volume). IR (KBr) n 935, 1027, 1130, 1206, 1232, 1259, 1314, 1326, 1355, 1389, 1454, 1512, 1554, 1591, 1645, 1627, 2865, 3211, 3408 cm-1; 1H NMR (500 MHz, DMSO-d6) d 2.41 (s, 3H, -COCH3), 3.02 (br.s, 4H, (H-3’,H-5’)), 3.96 (br.s, 4H, (H-2’,H6’)), 6.63 (br.s, 1H, H-5’’), 7.44 (d, J = 3.9 Hz , 1H, H-3), 7.78 (s, 1H, H-5), 7.95 (br.s, 1H, H-7), 7.97 (br.s, 1H, H-8), 8.22 (d, J = 7.9 Hz, 1H, H-4),8.37 (d, J = 7.9 Hz, 2H, (H-4’’, H-6’’)), 8.70 (br.s, 1H, H-2), 10.22 (s, 1H, -NH), 13C NMR (125 MHz, DMSO-d6) d (ppm): 26.7 (-COCH3), 44.0 (C-2’,C-6’), 47.7 (C-3’,C-5’), 109.1 (C-5), 110.5 (C-5’’), 120.3 (C-7), 122.3 (C-3), 129.4 (C-4a), 130.4 (C-8), 135.2 (C-4), 141.8 (C-6), 143.8 (C-8a), 144.8 (-C=N), 148.4 (C-2),158.4 (C4’’, C-6’’), 161.8 (C-2’’), 195.1 (-COCH3), HRMS (ESI) calcd for C20H22N7O [M + H]+ m/z : 376.18803, found 376.18988.
Yield: 92.0%, yellowish powder, mp 125–127 °C; Rf = 0.79 (dichloromethane/methanol = 9.75:0.25 by volume). IR (KBr) n 957, 977, 1026, 1124, 1179, 1227, 1255, 1329, 1489, 1528, 1602, 1656, 2855, 3266 cm-1; 1H NMR (500 MHz, DMSO- d6) d 2.42 (s, 3H, -COCH3), 3.06 (s, 2H, (H-2’, H-6’)), 3.71 (s, 2H, (H-3’, H-5’)), 6.64 (br.s, 1H, H-5’’), 6.85 (d, J = 8.4 Hz, 1H, H-3’’), 7.43 (br.s, 1H, H-3), 7.53 (t, J = 8.2 Hz, 1H, H-4’’), 7.78 (s, 1H, H-5), 7.95 (d, J = 9.1 Hz, 1H, H-7), 7.97 (d, J = 9.0 Hz, 1H, H-8), 8.13 (br.s, 1H, H-6’’), 8.22 (d, J = 8 Hz, 1H, H-4), 8.70 (br.s, 1H, H-2), 10.17 (s, 1H, – NH), 13C NMR (125 MHz, DMSO-d6) d 26.4 (-COCH3), 45.3 (C-2’, C6’), 47.6 (C-3’, C-5’), 107.6 (C-3’’), 109.0 (C-5), 113.3 (C-5’’), 120.3 (C-7), 122.3 (C-3), 129.4 (C-4a), 130.5 (C-8), 135.2 (C-4), 138.0 (C-4’’), 141.8 (C-6), 143.9 (C=N), 144.8 (C-8a), 148.1 (C-6’’), 148.3 (C-2), 159.6 (C-2’’), 195.1 (-COCH3), HRMS (ESI) calcd for C21H23N6O [M + H]+ m/z :375.19279, found 375.19116.
The synthesized compounds (10a–l) were docked into the active site of c-Abl kinase. The 3D coordinates of the c-Abl kinase with known co-crystallized pyrimidine inhibitor (STI-571), were retrieved from Protein Data Bank (c-Abl, PDB code: 1IEP, resolution: 2.10 Å). First, the protein was prepared by adding hydrogen atoms using Biovia Discovery Studio software 4.5. The protein was cleaned, prepared, and repaired by adding missing atoms, correcting connectivity and names, and inserting missing loops. Secondly, the active site was defined around the co-crystallized ligand (STI-571) using the (From Current Selection) option of the (Define and Edit Binding Site) tool in Biovia Discovery Studio 4.5, shown in (Fig.
A. The co-crystallized pyrimidine ligand (1IEP); B. The co-crystallized pose and the docked pose of the co-crystallized ligand with RMSD = 2.10 Å; C. The binding site of the c-Abl-kinase protein (PDB code: 1IEP, resolution: 2.10 Å). Blue is for the co-crystal compounds, and red is for the highest Libdock score compound (Libdock score = 169.76).
The site-feature docking algorithm (LibDock) docks ligands, after removing their hydrogen atoms, into an existing active site as guided by binding hotspots. The ligands’ conformations are aligned to polar and apolar receptor interaction sites (i.e., hotspots). Conformations can be either pre-calculated or generated on the fly. Optionally, a CHARMm minimization step can be enabled to further optimize docked poses. Docking with LibDock has several steps which can be summarized in: (i) removal of hydrogen atoms. (ii) Ranking ligand conformations and pruning by solvent-accessible surface area (SASA). (iii) Finding hotspots using a grid that is placed into the binding site and using polar and apolar probes. (iv) The number of hotspots is trimmed by clustering to a user-defined value. (v) Docking of ligand poses by aligning the binding site hotspots, performed by using triplets (three ligand atoms are aligned to three receptor hotspots). (vi) a final BFGS pose optimization stage is performed using a simple pair-wise score (similar to Piecewise Linear Potential). (vii) The top-scoring ligand poses are retained. (viii) Hydrogen atoms are added back to the docked ligands. (ix) Optionally CHARMm minimization can be carried out to reduce steric clashes caused by added hydrogen atoms. The following LibDock parameters were applied in the current study: Before docking, the Biovia 4.5 module CAT-CONFIRM was used to generate a maximum of 250 conformers (not exceeding an energy threshold of 20 kcal/mol from the most stable conformer) for each ligand employing “Fast” conformation generation option. A binding site sphere of 12.77 Å radius surrounding the center of the co-crystallized ligand (STI-571) was retrieved from Protein Data Bank (c-Abl, PDB code: 1IEP, resolution: 2.10 Å) and was used to define the binding site. The number of binding site hotspots (polar and apolar) was set to 100. The ligand-to-hotspots matching RMSD tolerance value was set to 0.25 Å. The maximum number of poses saved for each ligand during hotspots matching before final pose minimization = 100. Maximum number of poses to be saved for each ligand in the binding pocket = 100. Minimum LibDock score (poses below this score are not reported) = 100. Maximum number of rigid body minimization steps during the final pose optimization (using BFGS method) = 50. The maximum number of steric clashes allowed before the pose-hotspot alignment is terminated (specified as a fraction of the heavy atom count) = 0.1. Maximum value for nonpolar solvent accessible surface area for a particular pose to be reported as successful = 15.0 Å2. Maximum value for polar solvent accessible solvent area for a particular pose to be reported as successful = 5.0 Å2. No final ligand minimization was implemented (i.e., in the binding pocket).
Toxicity prediction studies were performed using software suites implemented in Discovery Studio 4.5 from Biovia Inc. (San Diego, California, Structures were drawn by ChemDraw Ultra 7.0 (Cambridge Soft Corp. (http://www.cambridgesoft.com), USA).
The synthesized compounds 10a–l were analyzed using the default parameters in Biovia 4.5 using the TOPKAT toxicity function after the addition of all parameters.
Cells were seeded in 96-well plates at a density of 8 × 103 and 5 × 103, cells per well in the appropriate medium for A549 and MCF-7 cell lines, respectively. For screening anti-MCF7 anti-A549, the desired concentrations of the tested compounds were applied to the cells. For IC50 determination, the cells were treated with increasing concentrations of the tested compound, ranging from 1.00 to 1000 µM. The drugs were dissolved in DMSO before being added to cell cultures, and equal amounts of the solvent were added to control wells. After 48 h of treatment, 10 µL of MTT dye (working concentration of 5 mg/mL) was added to each well, and the plates were further incubated for 4 hours. Afterward, the media was discarded and 100 µL of DMSO was added to the wells. Optical density was measured at 570 nm and 630 nm with a microplate reader (µ Quant Plate Reader, Biotek, USA). All experiments were repeated in triplicate wells and on at least their independent occasions. Dose-response curves were used to obtain IC50 concentrations based on the following Equation:
Equation 1. Cell viability calculation.
Data were analyzed using Graph Pad Prism Software 9 from San Diego, California, USA (www.graphpad.com).
The slow growth of orange block crystals from a dilute 10b Methanol solution took place over one week. Using epoxy glue, a suitable crystal with approximate dimensions of 0.3 × 0.1 × 0.1 mm3 was mounted onto a glass fiber and then data were collected at room temperature (293 K) via the Oxford Xcalibur diffractometer. The CrysAlis Pro software (CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.35.19 (release 27-10-2011 CrysAlis171.NET) was employed to acquire and process the data. The crystal was kept at 293(2) K during data collection. Using Olex2, the structure was solved with the SHELXT structure solution program using Intrinsic Phasing and refined with the SHELXL (
Empirical formula | C16 H22 N4 O4 |
---|---|
Formula weight, g mol-1 | 334.37 |
Temperature, K | 293(2) |
Wavelengthλ, Å | 0.71073 |
Crystal system | Triclinic |
Space group | P1 |
a, Å | 5.2960(3) |
b, Å | 9.3134(6) |
c, Å | 9.4794(7) |
α/° | 106.359(6) |
β/° | 102.219(5) |
γ/° | 94.535(5) |
Volume, Å3 | 433.65(5) |
Z | 1 |
Density (calcd.), g cm-3 | 1.28 |
Absorption coefficient μ, mm-1 | 0.094 |
F (000), e | 178 |
2θrange for data collection, deg | 7.46–58.564 |
Index rangeshkl | -6 ≤ h ≤ 7, -11 ≤ k ≤ 12, -12 ≤ l ≤ 11 |
Reflections collected | 6705 |
Independent reflections | 3912 |
R (int) | 0.0231 |
Absorption correction | Semi-empirical from equivalents |
Refinement method | Full-matrix least-squares on F2 |
Data / restraints / parameters | 3912 / 3 / 232 |
R1a / wR2b [I > 2 sigma > (I)] | 0.0499 / 0.1005 |
R1a / wR2b(all data) | 0.0892 /0.1224 |
Goodness-of-fit on F2 | 1.026 |
Largest diff. peak/hole, eÅ-3 | 0.12 / -0.17 |
In this study, the hydrazonoyl chloride 8 was synthesized by directly coupling the respective quinoline-6-diazonium chloride with 3-chloroethane-2,4-dione in an aqueous alcoholic sodium acetate solution using the Japp-Klingemann reaction (Scheme
X-ray crystal structure determination was performed to confirm the structure of 10b (Scheme
According to computational docking, a small chemical attaching to a larger receptor should form a stable complex (
(Fig.
Toxicity and Carcinogenic predicted properties of amidrazone derivatives.
Compound No. | Daphnia EC50mg/L* | Carcinogenicity# |
---|---|---|
10a.mol | 0.54 | Carcinogen |
10b.mol | 0.1 | Non-Carcinogen |
10c.mol | 0.03 | Non-Carcinogen |
10d.mol | 0.11 | Non-Carcinogen |
10e.mol | 0.02 | Non-Carcinogen |
10f.mol | 0.04 | Non-Carcinogen |
10g.mol | 0.12 | Non-Carcinogen |
10h.mol | 0.04 | Non-Carcinogen |
10i.mol | 0.12 | Non-Carcinogen |
10j.mol | 0.11 | Non-Carcinogen |
10k.mol | 0.07 | Carcinogen |
10l.mol | 0.42 | Carcinogen |
Compound | IC50 µM(A549)# | IC50 µM(MCF-7)# |
10a | 482.6 | 317 |
10b | 320.2 | 539 |
10c | 96 | 95.2 |
10d | 43.1 | 59.1 |
10e | 150.3 | 191.7 |
10f | 862.9 | 1127 |
10g | 59.23 | 63.5 |
10h | 370.6 | 350 |
10i | 127 | 140.9 |
10j | 499.1 | 496.2 |
10k | 280.5 | 254 |
10l | 529.3 | 697 |
Cisplatin* | 22 | - |
Doxorubicin** | - | 5 |
The study reports synthesizing and testing a new series of compounds derived from 6-aminoquinoline and piperazine for their potential antitumor activity against breast and lung cancer cell lines (MCF-7 and A549). The compounds were synthesized by reacting the hydrazonoyl chloride derived from 6-aminoquinoline with the appropriate piperazine. The results of the in vitro tests showed that all of the compounds had weak antitumor activity against the tested cell lines, with compounds 10d and 10g exhibiting the most promising activity with IC50 values of 43.1 µM and 59.1 µM against A549 and MCF-7 cell lines, respectively.
Docking on the binding site of the c-Abl kinase enzyme suggests that the mechanism of antitumor effect may be due to the enzyme inhibition, further, ADMET in silico studies showed acceptable pharmacokinetic properties while the most active hits as possibly highly toxic with Daphnia EC50 0.11 and 0.12 mg/L so further in vivo evaluation of the safety profile is necessary for the development of the new safe, non-carcinogenic lead compounds.
The authors would like to express their gratitude to the Deanship of Scientific Research at Zarqa University and the University of Jordan for their generous funding.
Zarqa University’s Scientific Research Department provided funding for Ahmad K. Alarareh’s master’s project under fund code 5-2(3/2021).
Docking, synthesis, and anticancer assessment of novel quinoline-amidrazone hybrids
Data type: docx
Scanned IR, 1H NMR and 13C NMR spectra of all new compounds
Data type: docx