Research Article |
Corresponding author: Yulian Voynikov ( y_voynikov@pharmfac.mu-sofia.bg ) Academic editor: Plamen Peikov
© 2023 Yulian Voynikov, Reneta Gevrenova, Dimitrina Zheleva-Dimitrova, Vessela Balabanova, Irina Nikolova, Lyubomir Marinov, Iossif Benbassat, Georgi Momekov.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Voynikov Y, Gevrenova R, Zheleva-Dimitrova D, Balabanova V, Nikolova I, Marinov L, Benbassat I, Momekov G (2023) UHPLC-Orbitrap screening of oleraindoles in hydromethanolic extracts of Portulaca oleracea. Pharmacia 70(4): 1521-1527. https://doi.org/10.3897/pharmacia.70.e113577
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Purslane (Portulaca oleracea L., Portulacaceae) is a widespread edible plant with significant ethnobotanical and ethnopharmacological importance. The plant is characteristic for the presence of a class of indoline amide glucoside alkaloids, called cyclo-dopa amides, or oleraceins. Additionally, a new, structurally similar to oleraceins, class of indole amides have been discovered recently, called oleraindoles. These compounds have been evaluated to possess antiinflammatory and anticholinesterase activities. Herein, utilizing UHPLC-Orbitrap-MS with MS2 filtering by diagnostic ion filtering (DIF), and diagnostic difference filtering (DDF) using different data analysis tools, eight compounds with oleraindole structure were tentatively identified.
Oleraindole, Portulaca oleracea, UHPLC, Orbitrap
The most popular analytical technique for high throughput plant metabolomics analysis is ultra-high-performance liquid chromatography coupled with high-resolution mass spectrometry (UHPLC-HRMS). Ions are resolved typically within 5 ppm error that allows the chemical composition of ions to be determined with high accuracy and precision, which is crucial in metabolite annotation. In addition, a variety of electronic spectral databases and MS data analysis software packages have been developed to aid in the structural elucidation of unknowns (
Purslane (Portulaca oleracea L., Portulacaceae) is a widely distributed annual plant growing in many parts of the world. Purslane is consumed in soups and salads in many areas of Europe, the Mediterranean, and tropical Asian countries (
Recently, a new class of indole amides, called oleraindoles, have been isolated from purslane extracts (
And thus, by utilizing UHPLC-Orbitrap-MS, we sought to screen more oleraindole structures in hydromethanolic extracts of purslane. The raw MS2 data was filtered by diagnostic ion filtering (DIF) and diagnostic difference filtering (DDF) to select compounds bearing oleraindole structure, using the R programming language.
Portulaca oleracea, L. aerial parts were gathered from v. Orizovo, Bulgaria (42.208889°N, 25.170278°E) and identified by one of us (V.B.). Voucher specimens were deposited at the Faculty of Pharmacy, Medical University, Sofia, Bulgaria (Herbarium Facultatis Pharmaceuticae Sophiensis № 1563-1574).
Air-dried aerial parts of purslane were powdered, 3.00 g of plant material were extracted twice by sonication with 10 ml 70% MeOH at 50 °C for 15 min in an ultrasonic bath. The combined extracts were filtered and diluted with 70% MeOH to 25 ml in volumetric flasks. The extracts were diluted 10-fold before injection into the UHPLC-MS system, to a concentration of approx. 0.1 mg/ml.
The UHPLC system consisted of Dionex UltiMate 3000 RSLC HPLC, equipped with SRD-3600 solvent rack degasser, HPG-3400RS binary pump with solvent selection valve, WPS-3000TRS thermostated autosampler, and TCC-3000RS thermostated column compartment (Thermo Fisher Scientific). The UHPLC system was controlled by Chromeleon 7.2. The effluents were connected on-line with a Q Exactive Plus Orbitrap mass spectrometer (Thermo Fisher Scientific) equipped with a heated electrospray ionization (HESI-II) probe.
Elution was carried out on a Kromasil EternityXT C18 (1.8 μm, 2.1 × 100 mm) column maintained at 40 °C. The binary mobile phase consisted of 0.1% formic acid in water (A), and 0.1% formic acid in acetonitrile (B). The chromatographic elution was as follows: the mobile phase was held at 5% B for 0.5 min and then gradually turned to 33% B over 19.5 min. Next, % B was increased gradually to 95% over 1 min and maintained at 95% B for 2 min. The system was turned to the initial condition of 5% B in 1 min and re-equilibrated over 4 min. The flow rate and the injection volume were set to 300 μL/min and 1 μL, respectively.
A stepped 20–70 NCE was selected for initial screening of oleraindoles. Mass spectrometric parameters for Full-scan MS were as follows: resolution 17,500; AGC target 1e6; Maximum IT 83 ms; Scan range 290–1000 m/z. For dd-MS2, the following parameters were used: TopN 10; isolation window 1.0 m/z; stepped NCE 20–70; Minimum AGC target 8.00e3; Intensity threshold 9.6e4; Apex trigger 2 to 6 sec; Dynamic exclusion 3 sec. The structural elucidation of the oleraindoles was achieved by manual inspection of the MS2 spectra in Xcalibur 4.2 software (Thermo Fisher Scientific).
Vendor *.raw (Thermo Fisher Scientific) files were converted to either *.mzML files or *.mgf files by MSConvertGUI 3.0 (ProteoWizard) (
In order to group MS2 scans that presumably derive from the same substance, MS2 scans with precursor ion m/z within 15 ppm and within 1.5% deviation in retention times were added together, and afterwards manually checked. In these grouped MS2 scans, fragment ions that were within 15 ppm m/z were considered identical, their intensities added, and their masses recalculated by weighted mean averaging:
where (m/z)avg is the recalculated m/z value, (m/z)i and inti are the m/z and the intensity of the ith fragment ion, respectively. Fragment ions having an intensity < 0.5% and a mass < 90 Da were excluded. The retention time of the precursor ion with the highest intensity was chosen as the retention time of the grouped MS2 scans.
For simplicity and clarity of the presentation, the following abbreviations are used throughout this paper: hydroxycinnamic acid: HCA; coumaroyl: C; caffeoyl: A; glucosyl: G; feruloyl: F; 5,6-dihydroxyindole: I.
A workflow diagram of the study is shown in Fig.
Workflow chart of the study. The hydromethanolic extract of purslane was subjected to UHPLC-HRMS with subsequent MS2 analysis. After the raw data files were transformed with MSconvert, the data filtering (DIF and DDF) were performed either with MS2Analyzer, MZmine and the in-house R script. The scans that fell within 1.5% retention time threshold and 15 ppm m/z treshold were grouped, as belonging to the same substance. Then, the obtained list of possible oleraindole structures were manually inspected with the Xcalibur software.
Oleraindoles are characterized by 5,6-dihydroxyindole, and similarly to oleraceins are N-acetylated with either coumaric, caffeic, or ferulic acid (Scheme 1). In refining the MS2 raw data for compounds bearing oleraindole structure, DIF was applied based on the specific fragment ion for 5,6-dihydroxyindole: 148.04040 m/z (C8H6NO2-) for negative ionization mode, and 150.05495 m/z (C8H8NO2+) for positive ionization mode (Fig.
MS2 spectra of I-HCA conjugates (IC, IA, and IF). The m/z difference search was set to 149.04768 ± 15 ppm of the ions from which the difference originated. For IC: 149.0556 to 149.0424 Da; for IA: 149.0561 to 149.0419 Da; for IF: 149.0565 to 149.0415 Da.
Like oleraceins, all detected oleraindoles had the 5,6-dihydroxyindole N-acetylated with either coumaric, caffeic or ferulic acid. The sugar moieties are presumed to be glucoses, as in all isolated glucosylated oleraceins (
In total of 16 candidate substances were automatically selected, based on the above-mentioned criteria using DIF, followed by DDF, and their MS2 fragmentation manually inspected. Of the total 16 candidates, 3 had too low MS2 intensity (below 1.5E04) and were not interpreted, 5 were false positives, and 8 were identified as oleraindoles (see Table
List of the tentatively identified 8 oleraindoles, four of which are undescribed in the literature structures.
Compound | R1 | R2 | R3 | Structure match | |
---|---|---|---|---|---|
1 | IC | H | H | H | Oleraindole A ( |
2 | IA | H | OH | H | Oleraindole C ( |
3 | IF | H | OCH3 | H | Oleraindole B ( |
4 | GIC | H | H | glu | ( |
5 | GIA | H | OH | glu | this paper |
6 | GIF | H | OCH3 | glu | Oleraindole D ( |
7 | GGIC | H | H | glu-glu | β-D-Glc-Oleraindole G ( |
8 | FGGIC | H | H | fer-glu-glu | this paper |
After an in-depth MS2 analysis and tentative characterization of oleraindole compounds, diagnostic fragment ions were selected, their elemental composition, and hence, their exact mass determined (Fig.
Mass spectral and chromatographic characteristics of the tentatively identified 9 oleraindoles. The transitions, corresponding to the neutral loss (-149.083 Da) of the 5,6-dihydroxyindole, are also provided.
Abbrev. (elem. comp.) | Polarity | Molecular ion | Exact mass | ppm | MS2 | Rt (min) | Transitions |
---|---|---|---|---|---|---|---|
IF (C18H15NO5) | pos | 326.1031 | 326.1023 | 2.45 | 326.1023 (5.45), 177.0546 (100), 150.0550 (2.11), 149.0597 (4.43), 145.0284 (20.74), 117.0335 (21.26), 91.0542 (0.91) | 20.25 | 326.102 -> 177.055 |
neg | 324.0883 | 324.0877 | 1.85 | 324.0878 (5.87), 175.0391 (100), 161.0234 (2.47), 160.0156 (22.57), 148.0392 (25.84), 147.0314 (6.67), 132.0204 (15.23), 92.0490 (1.91) | 20.25 | 324.088 -> 175.039 | |
IC (C17H13NO4) | pos | 296.0925 | 296.0918 | 2.36 | 296.0917 (3.81), 150.0550 (2.65), 147.0441 (100), 119.0491 (22.15), 91.0542 (19.87) | 19.41 | 296.092 -> 147.044 |
neg | 294.0781 | 294.0772 | 3.06 | 294.0774 (4.98), 148.0392 (20.4), 147.0314 (5.45), 145.0283 (100), 117.0331 (25.11), 92.0490 (1.88) | 19.37 | 294.077 -> 145.028 | |
IA (C17H13NO5) | pos | 312.0880 | 312.0867 | 4.17 | 312.0867 (6.77), 177.0546 (7.52), 163.0390 (100), 150.0550 (18.04), 145.0284 (6.62), 135.0441 (14.55), 117.0335 (11.86), 107.0491 (1.58) | 16.48 | 312.087 -> 163.039 |
neg | 310.0729 | 310.0721 | 2.58 | 310.0724 (10.42), 161.0234 (100), 148.0392 (24.62), 147.0314 (5.09), 133.0282 (23.76), 132.0204 (2.77), 92.0490 (2.27) | 16.5 | 310.072 -> 161.023 | |
GIF (C24H25NO10) | pos | 488.1570 | 488.1552 | 3.69 | 326.1023 (9.48), 177.0546 (100), 150.0550 (1.93), 149.0597 (5), 145.0284 (18.94), 135.0441 (1.3), 117.0335 (20.58) | 13.61 | 326.102 -> 177.056 |
neg | 486.1413 | 486.1406 | 1.44 | 324.0878 (95.67), 175.0391 (100), 161.0234 (8.83), 160.0156 (38.8), 148.0392 (18.07), 147.0314 (7.4), 133.0282 (2.2), 132.0204 (21.02), 92.0490 (1.65) | 13.62 | 324.088 -> 175.039 | |
GIC (C23H23NO9) | pos | 458.1453 | 458.1446 | 1.53 | 296.0917 (10.52), 150.0550 (1.88), 147.0441 (100), 119.0491 (22.74), 91.0542 (13.6) | 12.91 | 296.092 -> 147.044 |
neg | 456.1307 | 456.13 | 1.53 | 294.0774 (80.95), 148.0392 (13.75), 147.0314 (5.25), 145.0283 (100), 117.0331 (29.38) | 12.89 | 294.077 -> 145.028 | |
GIA (C23H23NO10) | neg | 472.124 | 472.1249 | -1.91 | 310.0724 (100), 161.0234 (92.53), 148.0392 (37.56), 133.0282 (27.9) | 13.85 | 310.072 -> 161.023 |
GGIC (C29H33NO14) | neg | 618.1828 | 618.1828 | 0 | 294.0774 (65.77), 148.0392 (33.25), 145.0283 (100), 117.0331 (43.68) | 14.16 | 294.077 -> 145.028 |
FGGIC (C39H41NO17) | neg | 794.2279 | 794.2302 | -2.9 | 618.1824 (2.09), 294.0774 (42.06), 175.0391 (17.35), 160.0154 (2.93), 148.0391 (18.67), 145.0282 (100), 117.0330 (3.6) | 16.5 | 294.077 -> 145.028 |
Exact mass and elemental composition of diagnostic fragment ions corresponding to oleraindole substructures.
Substr. | Neg | Pos |
---|---|---|
I | 148.0404 (C8H6NO2-), 147.0326 (C8H5NO2•-), 92.0506 (C6H6N-) | 150.055 (C8H8NO2+) |
C | 145.0295 (C9H5O2-), 117.0346 (C8H5O-) | 147.0441 (C9H7O2+), 119.0491 (C8H7O+), 91.0542 (C7H7+) |
A | 161.0244 (C9H5O3-), 133.0295 (C8H5O2-), 132.0217 (C8H4O2•-) | 163.039 (C9H7O3+), 145.0284 (C9H5O2+), 135.0441 (C8H7O2+), 117.0335 (C8H5O+), 107.0491 (C7H7O+), 89.0386 (C7H5+) |
F | 175.0401 (C10H7O3-), 161.0244 (C9H5O3-), 160.0166 (C9H4O3•-), 133.0295 (C8H5O2-), 132.0217 (C8H4O2•-) | 177.0546 (C10H9O3+), 149.0597 (C9H9O2+), 145.0284 (C9H5O2+), 135.0441 (C8H7O2+), 117.0335 (C8H5O+), 107.0491 (C7H7O+), 89.0386 (C7H5+) |
IC | 294.0771 (C17H12NO4-) | 296.0917 (C17H14NO4+) |
IA | 310.072 (C17H12NO5-) | 312.0867 (C17H14NO5+) |
IF | 324.0877 (C18H14NO5-) | 326.1023 (C18H16NO5+) |
Herein, the diagnostic fragment ions for the corresponding substructures are described. For negative ionization mode, the coumaroyl (C) moiety at 145.0295 m/z can cleave a CO to result in fragment ion 117.0346 m/z. The caffeoyl (A) is evident from fragment 161.0244 m/z, that can lose a CO (−27.9949 Da), to result in 133.0295 m/z. The latter can repulse a hydrogen radical to result in fragment 132.0217 m/z. The feruloyl (F) moiety is evident from fragment 175.0401 m/z, which can lose a CH2, or a methyl radical, to result in fragment ions 161.0244, or 160.0166 m/z, respectively. Fragment ion 161.0244 m/z can follow the fragmentation described above for A, and fragment ion 160.0166 can cleave a CO to result in 132.0217 m/z. The 5,6-dihydroxyindole substructure is represented with fragment 148.0404 m/z. The latter can repulse a hydrogen radical, or cleave a CO, to result in fragment ions 147.0326, or 92.0506 m/z, respectively.
For positive ionization mode, the coumaroyl (C) moiety at 147.0441 m/z can endure two consecutive CO losses in the transition 147.0441 -> 119.0491 -> 91.0542 m/z. The caffeoyl (A) is evident from fragment ion 163.0390 m/z that can sustain a permutation of two CO and one water losses, resulting in the series of transitions outlined in Fig.
Here, the individual MS2 fragmentation analyses of the 8 tentatively identified by UHPLC-Orbitrap-MS oleraindoles are presented in increasing mass. For the HCA-I structures (IC, IA, and IF), the MS2 elucidation follows the diagnostic ions as described above. In the elucidation of the glucosylated HCA-I structures (GIC, GIA, and GIF), the fragmentation is identical to their corresponding HCA-I, where a m/z difference of 162.053 Da, corresponding to the cleavage of a G moiety, is observed between the molecular ion and the HCA-I (i.e., GIC -> IC). Compounds GGIC and FGGIC were evident in negative, but not in positive ionization mode. The fragmentation behavior of GGIC proceeds through a cleavage of the proximal GG (-324.107 Da) from the molecular ion at 618.1828 [M-H]- m/z to result in fragment ion 294.0774 m/z (IC). The following fragmentation of IC proceeds as described above. In the FGGIC structure, initially, there is a F cleavage from the molecular ion at 794.2302 [M-H]- m/z, to result in fragment ion 618.1828 m/z (GGIC). The fragmentation of the latter continues as described above.
Herein, utilizing UHPLC-Orbitrap-HRMS technique, in both negative and positive ionization modes, eight oleraindole compounds were tentatively identified in hydromethanolic extracts of purslane, of which 2 structures are described for the first time. Diagnostic ion filtering (DIF) and diagnostic difference filtering (DDF) were utilized to filter out MS data, using data analysis tools.
This work was financed by the European Union NextGenerationEU through the National Recovery and Resilience Plan of the Republic of Bulgaria, project No. BG-RRP-2.004-0004-C01.
MS/MS spectra of identified compounds
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