Research Article |
Corresponding author: Tutik Dwi Wahyumingsih ( tutikdw@ugm.ac.id ) Academic editor: Maya Georgieva
© 2023 Fathoni Ega Mulyana, Stephanus Satria Wira Waskitha, Deni Pranowo, Melati Khairuddean, Tutik Dwi Wahyumingsih.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Mulyana FE, Waskitha SSW, Pranowo D, Khairuddean M, Wahyumingsih TD (2023) Synthesis of chalcone derivatives with methoxybenzene and pyridine moieties as potential antimalarial agents. Pharmacia 70(4): 1305-1313. https://doi.org/10.3897/pharmacia.70.e107406
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Malaria remains an endemic disease in tropical regions, urgently needed the search for effective antimalarial agents due to resistance against existing drugs. This study investigated the potential antimalarial activity of pyridine-based chalcone derivatives against P. falciparum 3D7 and FCR3 strains. The chalcones were synthesized through a one-pot method using various pyridine carbaldehyde, resulting in yields ranging from 53.74 to 86.37%, and all products were characterized using FTIR, GC-MS, and NMR spectroscopies. Among the six chalcones tested, chalcone A [1-(2-methoxyphenyl)-3-(pyridin-2-yl)prop-2-en-1-one] displayed the highest antimalarial activity with IC50 values of 0.48 and 0.31 μg/mL against P. falciparum 3D7 and FCR3 strains, respectively, and a resistance index of 0.65. Molecular docking studies highlighted the interaction of the carbonyl group of all chalcones with Asn108 amino acid residue in the PfDHFR-TS active site via hydrogen bonding, demonstrating their potential as the antimalarial agent. Notably, the positioning of methoxy and pyridine substituents significantly influenced the antimalarial activity of the chalcones.
antimalarial, chalcone, P. falciparum, pyridine
The World Health Organization has observed a rise in malaria cases in developing countries. Globally, a total of 229 million malaria cases were reported in 2019, resulting in approximately 558 thousand deaths annually. There were 241 million malaria cases and 627,000 deaths due to the disease in 2020 (WHO 2021), representing a 12% increase in cases and deaths within one year. Indonesia, as one of the developing countries, reported 1.8 million malaria cases, mostly found in Papua (85.35%), West Nusa Tenggara (6.02%), and West Papua (3.92%). The primary reason for this situation is the resistance exhibited by the Plasmodium parasite towards widely used antimalarial drugs such as artemisinin, mefloquine, chloroquine, and piperaquine (
Chalcone has emerged as a promising candidate for a new antimalarial drug due to its simple structure, ease of synthesis, and potent activity against both the normal 3D7 strain and the resistant FCR3 strain of P. falciparum (
Hybridizing organic structures in drug design has attracted significant attention from researchers due to their enhanced effectiveness against drug-resistant parasites (
A preliminary screening in a search of the antimalarial agent could be conducted by using a specific receptor in Plasmodium parasites. Among the protein receptors located inside the Plasmodium parasites, P. falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) is a well-defined receptor target for antimalarial agents as this receptor plays a pivotal role in the production of folates and thymidylates which are necessary for the DNA synthesis process (Dasgupta and Anderson 2008). Approved antimalarial drugs such as chloroquine, pyrimethamine and cycloguanil act as antimalarial agents through PfDHFR-TS inhibition as their mechanism of action (
All the materials employed in this study were procured from E. Merck in pro analysis grade, i.e., 2-methoxyacetophenone, 3-methoxyacetophenone, 4-methoxyacetophenone, 2-pyridinecarbaldehyde, 3-pyridinecarbaldehyde, 4-pyridinecarbaldehyde, methanol, and NaOH. Furthermore, chemicals such as Roswell Park memorial institute (RPMI) solution, DMSO, inoculum solution, human serum, red blood cells, methanol, Giemsa coloring solution, P. falciparum strain 3D7 and FCR3 were used for the in vitro antimalarial assay.
Thin-layer chromatography using Merck pre-coated aluminum F254 plates was employed to monitor the progress of the synthesis reactions. The melting point of the synthesized compounds was measured using the Electrothermal 9100 equipment. Analysis of the infrared spectrum of the products was conducted using the Shimadzu Prestige-21 Fourier transform infrared (FTIR), while the purity and mass spectrum of the products were recorded using the Shimadzu QP2010S gas chromatography-mass spectrometry (GC-MS). The nuclear magnetic resonance (1H- and 13C-NMR) spectra were analyzed on JEOL JNMECA with a frequency of 500 and 125 MHz, respectively. The antimalarial assay was carried out using equipment, including laboratory glassware and 96-well microplates, micropipette, microtube, microcentrifuge, ELISA reader (Microplate Reader, Benchmark), CO2 incubator, object-glass, and microscope (Euromex iScope IS.1152-PLPHi). Molecular docking simulations were performed using a laptop with specifications of a central processing unit (CPU) of AMD Ryzen 7 4800H, a graphic processing unit (GPU) of NVIDIA GTX 1650 Ti, 16 GB of RAM, and a Windows 11 operating system.
The chalcones were synthesized in a one-pot synthesis method. A mixture of 3 mmol pyridinecarbaldehyde derivative in 15 mL methanol and 15 mL 10% (w/v) NaOH solution was added into a round-bottom flask placed in an ice bath with a temperature range of 0–10 °C. The next step involved the addition of methoxyacetophenone derivatives (3 mmol in 5 mL methanol) dropwise for 1 h, and then it was stirred for 5 h with a temperature range of 10±1 °C. The resulting solid was filtered, washed with water, and recrystallized with ethanol. The structure elucidation was performed using FTIR, GC-MS, 1H- and 13C-NMR spectrometers.
Chalcone A (0.39 g) was yielded as a yellowish solid in 53.74%. m.p 60–61 °C. FT-IR (KBr): 3070, 2947, 1658, 1604, 1597, 1473, 1319, 1249, 1018, 763 cm-1. 1H-NMR (500 MHz, CDCl3) δ 3.87 (s, 3H, -OCH3), 6.96 (d, J 7.4 Hz, 1H, HAr-Ph), 7.00 (tod, J 1.1, 7.5 Hz, 1H, HAr-Py), 7.24 (dodod, J 1.1, 4.6, 7.5 Hz, 1H, HAr-Py), 7.44 (tod, J 1.7, 7.4 Hz, 1H, HAr-Ph), 7.46 (dod, J 1.1, 7.5 Hz, 1H, HAr-Py), 7.59 (d, J 15.5 Hz, 1H, =CHα,), 7.61 (dod, J 1.7, 7.4 Hz, 1H, HAr-Ph), 7.69 (tod, J 1.7 & 7.4 Hz, 1H, HAr-Ph), 7.79 (d, J 15.5 Hz, 1H, =CHβ), 8.63 (dod, J 1.1, 4.6 Hz, 1H, HAr-Py). 13C-NMR (125 MHz, CDCl3) δ 55.86 (-OCH3), 111.68, 120.77, 124.21, 124.72, 129.07, 130.53, 133.27, 136.84, 150.22, 153.77, 158.41 (CAr), 130.47, 141.67 (Calkene), 193.27 (C=O). Mass spectrum (EI, m/z) = 239 (M+, 5), 180 (50), 135 (40), 119 (38), 118 (38), 104 (40), 92 (45), 77 (100), 51 (90).
Chalcone B (0.56 g) was produced in 78.01% as a yellowish solid. m.p. 63–65 °C. IR (KBr): 3039, 2947, 1658, 1604, 1597, 1473, 1327, 1242, 1018, 756 cm-1. 1H-NMR (500 MHz, CDCl3) δ 3.92 (s, 3H, -OCH3), 7.02 (d, J 8.0 Hz, 1H, HAr-Ph), 7.06 (t, J 8.0 Hz, 1H, HAr-Ph), 7.34 (dod, J 4.8, 7.8 Hz, 1H, HAr-Py), 7.49 (d, J 15.9 Hz, 1H, =CHα), 7.51 (tod, J 2.0, 8.0 Hz, 1H, HAr-Ph), 7.62 (d, J 15.9 Hz, 1H, =CHβ), 7.67 (dod, J 1.9, 7.8 Hz, 1H, HAr-Py), 7.90 (dot, J 2.0, 8.0 Hz, 1H, HAr-Ph), 8.60 (dod, J 1.9, 4.8 Hz, 1H, HAr-Py), 8.81 (d, J 1.9 Hz, 1H, HAr-Py). 13C-NMR (125 MHz, CDCl3) δ 55.84 (-OCH3), 111.74, 120.96, 123.85, 128.77, 130.67, 131.07, 133.54, 134.75, 149.94, 150.86, 158.41 (CAr), 128.86, 138.94 (CAlkene), 192.15 (C=O). Mass spectrum (EI, m/z) = 239 (M+, 3), 135 (45), 120 (20),104 (20), 92 (40), 77 (100), 51 (75).
Chalcone C (0.41 g) was yielded in 57.12% as a yellowish solid. m.p 87–88 °C. IR (KBr): 3070, 2947, 1666, 1604, 1581, 1481, 1303, 1249, 1018, 784, 694 cm-1. 1H-NMR (500 MHz, CDCl3) δ 3.89 (s, 3H, OCH3), 7.15 (dod, J 2.0, 7.9 Hz, 1H, HAr-Py), 7.37 (dod, J 4.7, 7.9 Hz 1H, HAr-Py), 7.43 (t, J 8.0 Hz 1H, HAr-Ph), 7.55 (dod, J 1.4, 2.3 Hz, 1H, HAr-Ph), 7.59 (d, J 15.8 Hz, 1H, =CHα), 7.61 (dot, J 1.4, 8.0 Hz, 1H, HAr-Ph), 7.79 (d, J 15.8 Hz, 1H, =CHβ), 7.96 (dot, J 2.3, 8.0 Hz, 1H, HAr-Ph), 8.63 (dod, J 2.0, 4.7 Hz, 1H, HAr-Py), 8.86 (d, J 2.0 Hz, 1H, HAr-Py). 13C-NMR (125 MHz, CDCl3) δ 55.60 (OCH3), 112.96, 119.75, 121.19, 123.95, 129.80, 130.75, 134.73, 139.16, 150.07, 151.18, 160.05 (CAr), 123.92, 141.03 (CAlkene), 189.68 (C=O). Mass spectrum (EI, m/z) = 239 (M+, 30), 210 (20), 135 (30), 132 (40), 104 (40), 92 (45), 77 (100), 51 (90).
Chalcone D (0.52 g) was yielded in 71.65% as a yellowish solid. m.p 76–78 °C. IR (KBr): 3055, 2970, 1658, 1604, 1597, 1465, 1327, 1257, 1018, 833 cm-1. 1H-NMR (500 MHz, CDCl3) δ 3.85 (s, 3H, OCH3), 6.95 (dot, J 2.3, 9.1 Hz, 2H, HAr-Ph,), 7.25 (dodod, J 1.2, 5.2, 7.5 Hz, 1H, HAr-Py), 7.43 (d, J 7.5 Hz, 1H, HAr-Py), 7.70 (tod, J 1.2, 7.5 Hz, 1H, HAr-Py), 7.73 (d, J 15.0 Hz, 1H, =CHα), 8.09 (dot, J 2.3, 9.1 Hz, 2H, HAr-Ph), 8.10 (d, J 15.0 Hz, 1H, =CHβ), 8.65 (dod, J 1.2, 5.2 Hz, 1H, HAr-Py). 13C-NMR (125 MHz, CDCl3) δ 55.60 (OCH3), 113.95, 124.40, 125.48, 130.47, 131.20, 137.00, 150.21, 153.43, 163.74 (CAr), 125.51, 142.06 (CAlkene), 188.74 (C=O). Mass spectrum (EI, m/z) = 239 (M+, 40), 210 (100), 135 (60), 104 (50), 92 (40), 77 (80), 51 (50).
Chalcone E (0.54 g) was produced as a yellowish solid with a 75.23% yield. m.p 99–100 °C. IR (KBr): 3039, 2947, 1666, 1604, 1597, 1465, 1311, 1257, 1026, 840 cm-1. 1H-NMR (500 MHz, CDCl3) δ 3.89 (s, 3H, OCH3), 6.98 (dot, J 2.7, 9.0 Hz, 2H, HAr-Ph), 7.35 (dod, J 4.6, 8.0 Hz, 1H, HAr-Py), 7.60 (d, J 15.8 Hz, 1H, =CHα), 7.76 (d, J 15.8 Hz, 1H, =CHβ), 7.93 (dot, J 2.0, 8.0 Hz, 1H, HAr-Py), 8.03 (dot, J 2.7, 9.0 Hz, 2H, HAr-Ph), 8.61 (dod, J 2.2, 4.6 Hz, 2H, HAr-Py), 8.84 (d, J 2.0 Hz, 1H, HAr-Py). 13C-NMR (125 MHz, CDCl3) δ 55.65 (OCH3), 114.04, 123.79, 123.88, 128.58, 130.34, 131.03, 148.31, 149.39, 163.67 (CAr), 123.41, 135.54 (CAlkene), 195.65 (C=O). Mass spectrum (EI, m/z) = 239 (M+, 40), 210 (20), 135 (70), 119 (38), 107 (20), 92 (50), 77 (100), 51 (80).
Chalcone F (0.62 g) was yielded as a yellowish solid in 86.37%. m.p 128–130 °C. IR (KBr): 3032, 2970, 1666, 1604, 1597, 1465, 1311, 1234, 1018, 810 cm-1. 1H-NMR (500 MHz, CDCl3) δ 3.80 (s, 3H, OCH3), 6.83 (d, J 8.6 Hz, 2H, HAr-Ph), 6.93 (d, J 5.7 Hz, 2H, HAr-Py), 6.99 (d, J 9.2 Hz, 1H, =CHα), 7.73 (d, J 8.6 Hz, 2H, HAr-Ph), 8.03 (d, J 9.2 Hz, 1H, =CHβ), 8.40 (d, J 5.7 Hz, 2H, HAr-Py). 13C-NMR (125 MHz, CDCl3) δ 55.67 (OCH3), 114.07, 123.04, 128.44, 130.35, 140.80, 149.97, 163.75 (CAr), 126.06, 147.95 (CAlkene), 195.35 (C=O). Mass spectrum (EI, m/z) = 239 (M+, 40), 210 (10), 135 (100), 107 (20), 92 (40), 77 (80), 51 (70).
The in vitro antimalarial assays were performed using the technique described by
The inhibition percentage of P. falciparum was determined by analyzing each group of 1000 erythrocyte cells infected with P. falciparum using a microscope with a magnification of 1000×. The IC50 value was calculated through probit analysis. Triplicate analyses were performed for each sample.
In this study, we investigated the mechanism of action of all synthesized chalcones, chalcone A–F, in inhibiting P. falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) receptor. In addition, we also investigated the mechanism of a well-recognized antimalarial agent, chloroquine, in inhibiting the same receptor as a comparison. AutoDock Vina 1.1.2 software was used for all molecular docking simulations (
The preparation of the three-dimensional structure of all chalcones and chloroquine was carried out prior to the molecular docking simulation. The process involved building and geometrically optimizing their structure using GaussView 5.0 and Gaussian 09 package (
Six chalcone derivatives have been synthesized from the methoxy-substituted acetophenone and various pyridinecarbaldehyde using a base-catalyzed Claisen-Schmidt condensation reaction. The synthesis scheme is illustrated in Scheme 1. The resulting products were recrystallized from ethanol to obtain yellowish solids with yields ranging from 53.74 to 86.37%. Purity analysis was performed using GC, which showed a single peak at a retention time range of 24–27 min for all products, indicating their high purity level (approximately 100%). In the MS spectra, all chalcones displayed a molecular ion at m/z = 239, corresponding to each chalcone’s molecular mass. FTIR analysis revealed the presence of characteristic enone functional groups at 1604–1666 cm-1 (HC=CH-C=O) and these findings were consistent with previous reports (
All synthesized compounds have the same molecular formula, i.e., C15H13NO2, and were examined to assess the effect of methoxy groups and nitrogen atoms on the antimalarial activity of chalcones. The results of the antimalarial activities of chalcones A–F against P. falciparum 3D7 and FCR3 strains are listed in Table
The antimalarial activity of chalcones A–F against Plasmodium falciparum.
Chalcones | IC50, 3D7 strain (μg/mL) | IC50 FCR3 strain (μg/mL) | Resistance index |
---|---|---|---|
A | 0.48 | 0.31 | 0.65 |
B | 4.16 | 2.68 | 0.65 |
C | 0.98 | 1.03 | 1.05 |
D | 4.46 | 2.17 | 0.49 |
E | 1.07 | 1.13 | 1.06 |
F | 1.11 | 1.02 | 0.92 |
In terms of antimalarial activity against P. falciparum 3D7, ortho-methoxy groups exhibited an IC50 value range of 0.48–4.16 μg/mL, while meta- and para-methoxy groups demonstrated IC50 value of 0.98 and 1.07–4.46 μg/mL, respectively. These results suggest that ortho-methoxy groups have greater antimalarial activity compared to meta-methoxy groups and are significantly more active than para-methoxy groups of the chalcone’s chemical structure as a P. falciparum 3D7 antimalarial agent. A similar trend was observed for P. falciparum FCR3, with ortho-methoxy groups displaying an IC50 range of 0.31–2.68 μg/mL, whereas meta- and para-methoxy groups exhibited IC50 values of 1.03 and 1.02–2.17 μg/mL, respectively.
Regarding the nitrogen atoms, the 2-pyridine moiety demonstrated an IC50 value range of 0.48–4.46 μg/mL against P. falciparum 3D7, while the 3- and 4-pyridine moieties exhibited IC50 values of 0.98–4.16 and 1.11 μg/mL, respectively. These results indicate that the 2-pyridine moiety possesses higher antimalarial activity than 3-pyridine and is significantly more active than 4-pyridine within the chalcone chemical structure as a P. falciparum 3D7 antimalarial agent. Similar observations were made for P. falciparum FCR3, with the IC50 range for the 2-pyridine moiety being 0.31–2.17 μg/mL, while the IC50 values for 3- and 4-pyridine moieties were 1.03–2.68 and 1.02 μg/mL, respectively. These findings indicate that the presence of 2-methoxy and 2-pyridine substituents play a crucial role in the antimalarial activity of chalcones against both P. falciparum 3D7 and FCR3.
Furthermore, all chalcones had a low resistance index (0.49–1.06) compared with chloroquine, which has a resistance index of 11 (
A molecular docking study was conducted on the PfDHFR-TS receptor as the target, which is one of a kind important target of antimalarial drugs, to investigate the possibility of the inhibitory mechanism of chalcone A–F and chloroquine as antimalarial drugs. The redocking results revealed that the native ligand had a binding affinity of -6.8 kcal/mol and closely matched the X-ray crystallographic conformation, with an RMSD value of 1.828 Å. This demonstrates the molecular docking protocol’s reliability and validity (
The molecular docking results of chalcone A–F, chloroquine, as well as the native ligand are tabulated in Table
The molecular docking results of the native ligand, chalcones A–F, and chloroquine against PfDHFR-TS receptor.
Ligand | Binding affinity (kcal/mol) | Interactions | ||
---|---|---|---|---|
Chalcone A | -7.0 | H-Bond | : | Asn108 (2.322Å) |
van der Waals | : | Ile14, Cys15, Leu40, Gly41, Val45, Asp54, Ser111, Leu164, Tyr170 | ||
Carbon H-bond | : | Gly44 | ||
Pi-Pi Stacked | : | Phe58 | ||
Alkyl | : | Met55 | ||
Pi-Alkyl | : | Ala16, Phe58 | ||
Pi-Sigma | : | Leu46 | ||
Chalcone B | -6.9 | H-Bond | : | Asn108 (2.469 Å) |
van der Waals | : | Cys15, Met55, Ser111, Pro113, Phe116, Leu119, Leu164 | ||
Unfavorable Acceptor-Acceptor | : | Asp54 | ||
Pi-Pi Stacked | : | Phe58 | ||
Pi-Alkyl | : | Ile14, Ala16, Ile112 | ||
Alkyl | : | Leu46 | ||
Chalcone C | -7.2 | H-Bond | : | Asn108 (2.266 Å) |
van der Waals | : | Cys15, Leu40, Leu46, Met55, Phe58, Pro113, Leu119, Leu164 | ||
Pi-Donor H-Bond | : | Tyr170 | ||
Carbon H-bond | : | Ala16, Ser111 | ||
Pi-Sigma | : | Ile112 | ||
Alkyl | : | Ile112 | ||
Pi-Alkyl | : | Ala16 | ||
Chalcone D | -7.2 | H-Bond | : | Asn108 (2.103 Å) |
van der Waals | : | Cys15, Asp54, Tyr57, Pro113, Phe116, Leu119, Leu164, Tyr170, Thr185 | ||
Pi-Sigma | : | Ile112 | ||
Pi-Pi Stacked | : | Phe58 | ||
Alkyl | : | Ile14, Ala16 | ||
Pi-Alkyl | : | Ala16, Met55, Phe58 | ||
Chalcone E | -7.3 | H-Bond | : | Asn108 (2.393 Å) |
van der Waals | : | Leu40, Leu46, Phe58, Leu119, Leu164 | ||
Carbon H-Bond | : | Cys15, Ala16 | ||
Pi-Donor H-bond | : | Tyr170 | ||
Pi-Sigma | : | Ile112 | ||
Alkyl | : | Met55, Pro113 | ||
Pi-Alkyl | : | Ala16, Phe116 | ||
Chalcone F | -7.1 | H-Bond | : | Asn108 (2.004 Å) |
van der Waals | : | Cys15, Asp54, Tyr57, Pro113, Phe116, Leu119, Leu164, Tyr170, Thr185 | ||
Pi-Sigma | : | Ile112 | ||
Pi-Pi Stacked | : | Phe58 | ||
Alkyl | : | Ile14, Ala16 | ||
Pi-Alkyl | : | Ala16, Met55, Phe58 | ||
Chloroquine | -7.4 | H-Bond | : | Asn108 (2.286 Å) |
van der Waals | : | Cys15, Trp48, Met55, Leu164, Tyr170 | ||
Carbon H-Bond | : | Asp54, Ser111, Pro113 | ||
Pi-Sigma | : | Ile112 | ||
Alkyl | : | Ile14, Ala16, Leu40, Leu46, Leu119 | ||
Pi-Alkyl | : | Phe58, Ile112, Phe116 | ||
Native ligand (WR99210) | -6.8 | H-Bond | : | Asp54 (3.331 Å), Leu164 (3.200 Å) |
van der Waals | : | Ile14, Cys15, Ala16, Met55, Asn108, Ile112, Thr185 | ||
Unfavorable Donor-Donor | : | Tyr170 | ||
Pi-Sigma | : | Phe58 | ||
Amide-Pi Stacked | : | Ser111 | ||
Alkyl | : | Val45, Leu46 | ||
Pi-Alkyl | : | Leu46, Pro113 |
The findings indicated that chloroquine was stabilized by a hydrogen bond with one of the crucial amino acid residues, Asn108, and mostly by hydrophobic interactions along with van der Waals interactions. We also found that all chalcones established interaction with Asn108 through the formation of a hydrogen bond as well. The carbonyl group of the chalcones played a crucial role in binding to PfDHFR active site, and there were no steric clashes with Asn108, which is associated with resistance (
The molecular docking study of chloroquine against PfDHFR-TS has been also reported (
Chalcone derivatives bearing methoxy and pyridine moieties were successfully synthesized via a one-pot method using NaOH as a base catalyst, yielding between 53.74 to 86.37%. The structures of all synthesized compounds were confirmed to be highly pure through FTIR, MS, and NMR spectroscopies. In vitro assays were performed to examine the antimalarial activity of the synthesized chalcones against P. falciparum 3D7 and FCR3 strains. The results indicated that 2-methoxy and 2-pyridine substituents significantly contributed to the antimalarial activity, yielding IC50 values of 0.48 and 0.31 μg/mL, respectively. Molecular docking studies revealed that the carbonyl group in chalcones formed a hydrogen bond with the crucial amino acid residue Asn108 in the PfDHFR-TS active site. Furthermore, other interactions such as van der Waals, pi-pi stacking, carbon-H bond, alkyl, and pi-alkyl further stabilized the ligand-receptor interaction.
We would like to express our gratitude to the Austrian-Indonesian Centre for Computational Chemistry (AIC) for their generous provision of GaussView 5.0 and Gaussian 09, enabling us to conduct this study.