Research Article |
Corresponding author: Kurnia Agustini ( kurn005@brin.go.id ) Academic editor: Georgi Momekov
© 2023 Kurnia Agustini, Susi Kusumaningrum, Firdayani, Asri Sulfianti, Michael Wink.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Agustini K, Kusumaningrum S, Firdayani, Sulfianti A, Wink M (2023) Estrogenic activity of Bryonia dioica Jacq. through in silico and in vitro studies on pS2 gene expression in the breast cancer cell line MCF-7. Pharmacia 70(4): 951-958. https://doi.org/10.3897/pharmacia.70.e103478
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Bryonia dioica is a member of the Cucurbitaceae that produces bioactive secondary metabolites (PSM), especially steroidal cucurbitacins. Tubers accumulate cucurbitacins, tetrahydrocucurbitacins, bryonioside, and polyphenols such as kaempferol and isovitexin. Through in vitro and simulation studies, this study explores the potential estrogenic and antiestrogenic properties of Bryonia dioica. In silico study was performed by molecular docking simulation to predict the binding affinity of Bryonia PSM in Estrogen Receptor Alpha using Molegro Virtual Docker ver 6.0. The in vitro investigation of a methanolic tuber extract used MCF-7 cells, a breast cancer cell line with estrogen receptor (ER), in a medium with or without estradiol. We also analyzed the effect of the extract on the expression of the estrogen-dependent pS2 gene using real-time polymerase chain reaction (RT-PCR). Molecular docking showed that Cucurbitacin-E exhibited the best binding affinity to the estrogen receptor with binding sites at His 524, Gly 521, Arg 394, Glu 353, and Leu 391. Methanolic extract of Bryonia dioica exhibited cytotoxic activity in MCF-7 cells with IC50 = 185 µg/mL (in medium without E2) and IC50 = 125 µg/mL (in medium with E2). In media with and without estrogen, it can stimulate the expression of the pS2 gene at a concentration of 50 µg/mL, a marker for estrogenic activity. The results suggest that Bryonia dioica contains phytoestrogenic PSM with ER agonistic and cytotoxic activities.
Bryonia dioica, estrogenic effect, MCF-7, pS2 gene, cucurbitacins, cytotoxicity
The term phytoestrogen describes a drug or compound from plants that exhibit estrogen-like effects (
Known phytoestrogens include isoflavones like genistein, biochanin A, and daidzein, coumestans like coumestrol, stilbenes like resveratrol and rhaponticin (
Isoflavones, like genistein, have estrogenic and antiestrogenic effects; they also inhibit tyrosine protein kinases (
Bryonia dioica Jacq. (Cucurbitaceae) is a perennial herb with a tuberous root, that grows in Europe, North Africa, and Western Asia (Sallam 2010). B. dioica roots contain alkaloids, polyphenols, triterpenes, sterols, saponins, and carbohydrates (Akihisa 1999; Bernaba 2012). The main active PSM are cucurbitacins (including cucurbitacin E, B, I, D, J, K, L), dihydro cucurbitacins (E and B), and tetrahydro cucurbitacin I (Pohlmann 1975), bryonolic acid (Saltykova 1968), and flavone C-glycosides (Baranowska 1995). This plant has traditionally been used for internal and external medicinal uses. Orally, B. dioica was used to treat inflammatory conditions, asthma, bronchial complaints, arthritis, hypertension, and intestinal ulcers. In folk medicine, this plant is known as a drastic purgative, emetic, bitter tonic, and anti-diabetic agent (
The present study investigated the binding activity of active compounds in B. dioica at the estrogen receptor (ER) using Molecular Docking. The molecular modeling studies confirmed the interactions of these compounds at the active site of ER. We also investigated the cytotoxicity of a methanolic extract of B. dioica roots against the estradiol-dependent breast cancer cell line MCF-7 in media with or without estradiol. This cell line enables the discovery of estrogen agonists. The expression of pS2, an estrogen-dependent gene, was examined as an agonistic and antagonistic ligand marker (
The structures of B. dioica PSM were obtained from the simplified molecular-input line-entry system (SMILES) in the Knapsack web version (http://www.knapsackfamily.com/KNApSAcK/) (Shinbo 2006) and converted into 2D and 3D structures minimized in ChemDraw Professional 20.1.1.125 (https://perkinelmerinformatics.com/). The Molegro Virtual Docker 6.0 program was used for protein preparation, detecting cavities, grid construction, and targeted ligand docking. The docking wizard was customized by using a default MolDock optimizer algorithm with 100 numbers of runs. The docking method was validated by extracting estradiol, already present in the protein estrogen receptor alpha (PDB ID: 5WGD), and executing the docking process. Programs that can discard positions that are less than a predetermined Root Mean Square Deviation (RMSD) value from the known conformation (typically 1.5 or 2, depending on ligand size) are regarded as successful (Hevener 2009). Additionally, ligands in the molecule table are substituted with compounds from B. dioica using alignment and docking simulations for each of compound.
Bryonia dioica tuber was obtained from the Department of Biology, Institute of Pharmacy and Molecular Biotechnology (IPMB), Heidelberg University, Germany. It had been obtained from wild plants in a vineyard near Dossenheim, Germany by MW. It was cut into small pieces and then extracted with methanol. The filtrate was dried in a vacuum rotary evaporator and freeze-dried.
MCF-7, a human breast adenocarcinoma cell line, came from the cell culture collection at the Department of Biology, Institute of Pharmacy and Molecular Biotechnology (IPMB), Heidelberg University, Germany. MCF-7 cells were cultivated and maintained in 75 cm2 flasks at 37 °C, 5% CO2, and 95% humidity. RPMI 1640 (Gibco Life Technologies) was supplemented phenol red, 2 mM glutamine, 100 U/ml penicillin, 1 mM sodium pyruvate, 0.1 mg/ml streptomycin, and 10% heat-inactivated Fetal Bovine Serum (FBS, Gibco Life Technologies).
Cells were seeded into 96-well plates (50,000 cells/well) in a medium free of estrogen (phenol-free RPMI 1640 containing 100 U/ml penicillin, 1 mM sodium pyruvate, and 0.1 mg/ml streptomycin) with 10% stripped- FBS. Stripped FBS was prepared as follows; The DCC solution contained 714 mg of dextran T70, 7.14 g of charcoal (Norit A), and 628 mg of NaCl dissolved in 50 ml H2O. 50 ml FBS was mixed with 1.5 ml DCC solution, then centrifuged at 2100× g for 30 min. The supernatant was separated and incubated with another 1.5 ml DCC solution for 30 min at 37 °C and centrifuged at 210× g for another 30 min. The stripped serum was sterile filtered through a 0.22 μm filter, then frozen at -20 °C until use. The cells were incubated for 48 h, and the medium was changed every 24 h with or without B. dioica extracts (twelve different concentrations from 0.25 to 1000 µg/mL; use µg/mL) and E2 (10 nM, as a positive control). After 48 h, the treated cells were washed twice with PBS. Neutral red (5 mg/100 ml in medium) was added and then incubated for three hours at 37 °C, 5% CO2, and in a 95% humidified atmosphere. After that, cells were washed with PBS twice. The dye was then homogenized for 30 min on a plate shaker with 150 μl of HCl-isopropanol (0.04 N HCl, 100% 2-propanol) to dissolve it. An ELISA reader was then used to measure the absorbance at 540 nm as an indicator of cell metabolism.
Cells were plated into six-well plates containing an estrogen-free culture medium, as previously described (200,000 cells/well). Every 24 h, the medium was replaced with a test compound. Test compounds are 50 µg/mL methanolic extract of B. dioica; 50 µg/mL methanolic extract with 10 nM E2 and 10 nM E2 as a positive control. The cells were washed with PBS twice after 48 h of treatment. Trypsinized cells were obtained by using trypsin-EDTA 300 μl/well at room temperature for 3 min. Next, 2 ml of medium (10% FBS) was added to inactivate trypsin. After centrifugation of the cells, RNA was extracted immediately from the cells pellets.
RNeasy Mini Kit (Qiagen) was used for RNA isolation, while RNase-Free DNase kit was used for DNA degradation (Qiagen). The first step in isolation is to dissolve the pellets. The sample is mixed with standardized buffer RTL (350 μl) (10 μl -mercaptoethanol [14.3 M] is added to 1.990 µl RTL buffer). The lysate was then homogenized by being passed through a gauge needle five times. The homogenized lysate was then added and thoroughly mixed with an equivalent volume of 70% ethanol. A 700 μL sample was then applied onto the RNA isolation column and centrifuged > 8000× g for 15 sec. Washing steps were started by adding 350 μL buffer RW1 onto the column and centrifuged > 8000× g for 15 seconds. Residual DNA was digested by adding 80 μL of DNase I solution [10 μL 2.72 KunitzU/μL DNase) to 70 μL buffer RDD] directly onto the column and then incubated for 15 min at room temperature. After that, 350 μL buffer RW1 was added to the column and centrifuged > 8000× g for 15 sec. Washing was repeated twice by adding 500 μL buffer RPE and centrifuging > 8000× g for 15 seconds. The adsorbed mRNA was eluted from the column and 30 μL of RNase-free water was added and centrifuged > 8000× g for 90 sec. The obtained total RNA is immediately placed at -80 °C. The concentration of total RNA was analyzed using Nanodrop Spectrophotometer (ND-1000 V3.30) at 260 nm. Electrophoresis was performed on agarose gels (0.1% ethidium bromide) for 10 min with 100V to check the quality of total RNA.
Complementary DNA (cDNA), which is more resistant to deterioration and is not damaged by ubiquitous RNAse, was then created from mRNA. Using Avian-Myeloblastosis-Virus reverse transcriptase (AMV-RTase), the mRNA was reverse transcribed and then stored at -20 °C until real-time PCR analysis. The protocol for reverse transcription included two steps. In step 1, the PCR tube contained 0.5 µg oligo (dT), 1 µg total RNA, and 5.6 µl DEPC-H2O was placed for 5 minutes in RT-PCR 70 °C. Step 2 involved the addition of 1 mM dNTP, 15 units of reverse transcriptase (AMV-RTase), 20 units of RNase inhibitor (RNasin), 5 mM MgCl2, and 4 μL of buffer 5× (10 mM Tris-HCl pH 7.0, 50 mM KCl, and 0.1% Triton X-100). RT-PCR was then conducted. All of the acquired cDNA was kept in storage at -20 °C.
PCR primers for pS2 and -actin (Eurofins mwg operon), a housekeeping gene are represented below:
pS2 (f) 5’- CAT GGA GAA CAA GGT GAT CTG-3’
pS2 (r) 5’- CAG AAG CGT GTC TGA GGT GTC-3’
β-actin (f) 5’-TCA TGA AGT GTG ACG TGG ACA TCC GC-3’
β-actin (r) 5’-CCT AGA AGC ATT TGC GGT GGA CGA TG-3’
For RT PCR, the reaction mixture contained 1 µl cDNA, 200 µM dNTP, 400 nM pS2 or β-actin primers (f, r), PCR buffer (10 mM Tris-HCl, 1.5 mM MgCl2, 50 mM KCl, 0.5% Triton X-100, pH 8.5) and 1 U Taq DNA polymerase. The amplicon was separated and visualized by agarose gel electrophoresis.
Docking studies were carried out to investigate potential binding affinities based on scoring functions. The top-ranked compounds were chosen using docking score and hydrogen interaction. The best RMSD that could be obtained was 0.73. Fig.
MolDock Score and HBond prediction from bioactive compounds of B. dioica. (http://www.knapsackfamily.com/KNApSAcK).
Compound name | MolDock Score | HBond |
---|---|---|
(24R)-24-Hydroxy-24-vinyllathosterol | -110.12 | -3.4872 |
(24S)-24-Hydroxy-24-vinyllathosterol | -118.48 | -4.2734 |
Bryonioside G | -17.754 | -4.4386 |
Bryonolic acid | -47.391 | -1.0481 |
Cabenoside D | -91.995 | -9.6648 |
Cucurbitacin B | -103.86 | -2.723 |
Cucurbitacin D | -91.817 | -4.0925 |
Cucurbitacin E | -124.11 | -2.3166 |
Cucurbitacin I | -108.72 | -2.3199 |
Cucurbitacin J | -95.612 | 0.81081 |
Cucurbitacin S | -38.353 | 0.63098 |
Dihydrocucurbitacin B | -111.79 | -2.6133 |
Bryoamaride | -7.4332 | -3.8326 |
Isovitexin 7-O-(6’’’-caffeoyl)-beta-D-glucopyranoside | -3.9544 | -3.1047 |
Saponarin | -47.274 | -1.4303 |
Bryodulcosigenin | -107.27 | -3.7409 |
Bryonioside A | -122.51 | -12.296 |
Bryonioside B | -63.314 | -2.9404 |
Bryonioside C | -14.557 | -9.7637 |
Bryonioside D | -72.044 | -5.7088 |
Bryonioside E | -113.7 | -13.078 |
Bryonioside F | -85.752 | -4.939 |
Kaempferol 3,7 dirhamnoside | -94.012 | -9.3677 |
ESTRADIOL | -102.27 | -9.5344 |
This assay found that methanolic extract of B. dioica has a cytotoxic effect. High doses of the B. dioica extract can prevent MCF-7 cells from proliferating (Table
IC50 values of B. dioica extract against MCF-7 cells in the media with or without 10 nM E2.
Sample | Without E2 | With E2 |
---|---|---|
IC50 (µg/mL) | IC50 (µg/mL) | |
Methanolic extract of Bryonia dioica | 185 | 125 |
Presenilin-2 (pS2) is produced by estrogen-responsive cells after E2 activation. Figs
Due to their powerful ability to suppress a variety of malignancies, cucurbitacins and their derivatives have attracted increased interest in treating cancer. According to the results of an in-silico investigation, cucurbitacin E, an oxygenated tetracyclic triterpenoid, had the highest Molecular Docking score among the bioactive components of B. dioica. Several mechanisms, such as proapoptotic, the induction of autophagy, cell cycle arrest, the prevention of cancer invasion and migration, and many more, are used by cucurbitacins and their derivatives to inhibit cancer growth. Cucurbitacins also alter several intracellular signaling pathways. Intriguingly, each derivative of cucurbitacins may limit the growth and progression of several cancer cell types by triggering somewhat distinct molecular signaling cascades. The primary avenues through which cucurbitacins induce apoptosis to exhibit their powerful anticancer effect are signal transducers and activators of transcription 3 (STAT3) and Janus kinase (JAK) signaling. The primary targets of cucurbitacins are JAK/STAT pathway, MAPK pathway, and Wnt signaling. Moreover, cucurbitacins can cause G2/M phase cell cycle arrest, which could be another strategy for treating a variety of malignancies (
According to other publications, proliferation and telomerase activity of some breast cancer cell lines are inhibited by cucurbitacin B, and it also appears to have an inhibitory effect on ER-negative breast cancer cells SKBR-3 (Duangmano 2010). CuE led to cell death and G2/M cell cycle arrest in the Triple Negative Breast Cancer (TNBC) cell lines, MDA-MB-468 and SW527 (Kong 2014). CuE also reduced the percentage of T24 cells viable in human bladder T24 cancer cell lines (Huang 2012).
Our research has shown that the extract of B. dioica can inhibit and kill the aggressive MCF7 breast cancer cell line. Interestingly, the cooperation between B. dioica and E2 significantly promotes this cytotoxic activity. On a cellular level, this cell death was frequently accompanied by the induction of apoptosis and a G2/M phase cell cycle arrest (
The pS2 gene product is a small, secreted polypeptide with properties that resemble several growth factors, but its function is still unknown. According to preliminary research, pS2 may serve as a marker for hormone-dependent breast cancer. The implicated function of pS2 in the estrogen-mediated progression of breast malignancies and its potential application as a marker for estrogen-dependent cancer will continue to be the focus of ongoing studies (
This study showed that Cucurbitacin E in Bryonia dioica provides the best binding affinity with ER-α. In contrast, the in vitro study showed that the methanolic extract had cytotoxic effects in MCF-7 cells. The cytotoxic activities may be due to a disturbance of the cytoskeleton by curcubitacins (
The first author is a participant in an internship program at IPMB Heidelberg, who contributed mainly substantially to the in vitro research work presented in the manuscript. The second and third co-author contributed to the molecular docking work. The fourth co-author helped to elaborate the discussion of in vitro assay. The last co-author directed all the experiments, facilitated this work in IPMB Heidelberg, and helped to improve the manuscript.
The International Capacity Building (InWent) Program in Industrial Biotechnology, Germany, 2009, provided funding for this work. We appreciate the assistance of Dorothea Kauffmann, Sammy Abbas, and Lei Zao from IPMB Heidelberg.